RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 CASTP20810 708 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 KCNJ6P48051 423 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 SCNN1DP51172 638 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 HUNKP57058 714 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 RNASELQ05823 741 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 TAF1CQ15572 869 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 CFAP58Q5T655 872 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 CHD1LQ86WJ1 897 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 MCF2L2Q86YR7 1114 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 TMEM57Q8N5G2 664 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 ADPGKQ9BRR6 497 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 POLKQ9UBT6 870 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 ARHGEF37A1IGU5 675 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 USP17L3A6NCW0 530 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 USP17L4A6NCW7 530 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 CBFA2T2O43439 604 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 LMAN1P49257 510 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 USP17L1Q7RTZ2 530 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 FNBP4Q8N3X1 1017 aaPredicted RBP3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 ZNF592Q92610 1267 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 EXOC4Q96A65 974 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 KIFC2Q96AC6 838 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 RPS6KC1Q96S38 1066 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 METTL22Q9BUU2 404 aaPredicted RBP3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 DBNDD1Q9H9R9 158 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 WDR33Q9C0J8 1336 aaKnown RBP3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 PLEKHH1Q9ULM0 1364 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 NLRP1Q9C000 1473 aa3.34□□□□□ -1.88
SMCHD1-203ENST00000577880 KBTBD13C9JR72 458 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CFBP00751 764 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 HOXB7P09629 217 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 HARSP12081 509 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 VPS72Q15906 364 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CERKLQ49MI3 558 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 ARHGEF16Q5VV41 709 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CCDC144CPQ8IYA2 1237 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 EXOC8Q8IYI6 725 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 MNS1Q8NEH6 495 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 GCNAQ96QF7 691 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 FNBP1Q96RU3 617 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 HMG20BQ9P0W2 317 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 POLR3AO14802 1390 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 PLEKHG1Q9ULL1 1385 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 C10orf71Q711Q0 1435 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 TIAM1Q13009 1591 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 UGGT1Q9NYU2 1555 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 ERBB4Q15303 1308 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CCDC85CA6NKD9 419 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 POTEB2H3BUK9 544 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CCP110O43303 1012 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 PHKG2P15735 406 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 PLA2G5P39877 138 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 TRPC3Q13507 836 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 TBC1D10BQ4KMP7 808 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 GIGYF2Q6Y7W6 1299 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 MAPKAPK5Q8IW41 473 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CCDC155Q8N6L0 562 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 METTL13Q8N6R0 699 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 RHPN1Q8TCX5 695 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CTNNBL1Q8WYA6 563 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 SSH1Q8WYL5 1049 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 ZNF496Q96IT1 587 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 TSNARE1Q96NA8 513 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 PAG1Q9NWQ8 432 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 MRPL11Q9Y3B7 192 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 KCNQ2O43526 872 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 XPOTO43592 962 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 TAF5LO75529 589 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 DEFB132Q7Z7B7 95 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 FAM114A1Q8IWE2 563 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 SYNE4Q8N205 404 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 TBC1D5Q92609 795 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CSRNP1Q96S65 589 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 MTFR1LQ9H019 292 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 PIDD1Q9HB75 910 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 NRBP2Q9NSY0 501 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 EXOC7Q9UPT5 735 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 NUB1Q9Y5A7 615 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 IL16Q14005 1332 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CCDC169A6NNP5 214 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 DPYSL4O14531 572 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 RNF113AO15541 343 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CSPG5O95196 566 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 MBD3O95983 291 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 TFRCP02786 760 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 SRGAP2BP0DMP2 458 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 MTIF2P46199 727 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 YARSP54577 528 aaKnown RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CBX1P83916 185 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 FAM160B1Q5W0V3 765 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 OTUD6AQ7L8S5 288 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 ZBTB8OSQ8IWT0 167 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 OTUD6BQ8N6M0 293 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 TGFBRAP1Q8WUH2 860 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 NSMCE1Q8WV22 266 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 ERCC4Q92889 916 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CDCA7LQ96GN5 454 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 CCDC17Q96LX7 622 aa3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 JPH2Q9BR39 696 aaPredicted RBP3.33□□□□□ -1.88
SMCHD1-203ENST00000577880 SH2B1Q9NRF2 756 aaPredicted RBP3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms