RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CD99L2Q8TCZ2 262 aa21.3■■□□□ 1
CLN3-216ENST00000565316 FAM151AQ8WW52 585 aa21.3■■□□□ 1
CLN3-216ENST00000565316 WRNIP1Q96S55 665 aa21.3■■□□□ 1
CLN3-216ENST00000565316 DENND2AQ9ULE3 1009 aa21.3■■□□□ 1
CLN3-216ENST00000565316 PHKA1P46020 1223 aa21.29■■□□□ 1
CLN3-216ENST00000565316 CDC42EP5Q6NZY7 148 aa21.29■■□□□ 1
CLN3-216ENST00000565316 ZKSCAN4Q969J2 545 aaPredicted RBP21.29■■□□□ 1
CLN3-216ENST00000565316 PTPN22Q9Y2R2 807 aa21.29■■□□□ 1
CLN3-216ENST00000565316 LDHBP07195 334 aaKnown RBP21.29■■□□□ 1
CLN3-216ENST00000565316 GNAI3P08754 354 aa21.29■■□□□ 1
CLN3-216ENST00000565316 CAP1Q01518 475 aa21.29■■□□□ 1
CLN3-216ENST00000565316 MTX1Q13505 466 aa21.29■■□□□ 1
CLN3-216ENST00000565316 FAM43AQ8N2R8 423 aa21.29■■□□□ 1
CLN3-216ENST00000565316 EFCC1Q9HA90 598 aa21.29■■□□□ 1
CLN3-216ENST00000565316 MYH13Q9UKX3 1938 aa21.28■■□□□ 1
CLN3-216ENST00000565316 SLC34A2O95436 690 aa21.28■■□□□ 1
CLN3-216ENST00000565316 CETPP11597 493 aa21.28■■□□□ 1
CLN3-216ENST00000565316 ADORA1P30542 326 aa21.28■■□□□ 1
CLN3-216ENST00000565316 PPIL2Q13356 520 aa21.28■■□□□ 1
CLN3-216ENST00000565316 TAF1CQ15572 869 aaPredicted RBP21.28■■□□□ 1
CLN3-216ENST00000565316 CCDC102BQ68D86 513 aa21.28■■□□□ 1
CLN3-216ENST00000565316 ZNF341Q9BYN7 854 aa21.28■■□□□ 1
CLN3-216ENST00000565316 ZFYVE28Q9HCC9 887 aa21.28■■□□□ 1
CLN3-216ENST00000565316 ZCCHC17Q9NP64 241 aaKnown RBP21.28■■□□□ 1
CLN3-216ENST00000565316 ZNF112Q9UJU3 913 aa21.28■■□□□ 1
CLN3-216ENST00000565316 IRF6O14896 467 aa21.27■□□□□ 0.99
CLN3-216ENST00000565316 NFIAQ12857 509 aa21.27■□□□□ 0.99
CLN3-216ENST00000565316 MIGA2Q7L4E1 593 aa21.27■□□□□ 0.99
CLN3-216ENST00000565316 FAM198AQ9UFP1 575 aa21.27■□□□□ 0.99
CLN3-216ENST00000565316 PDS5AQ29RF7 1337 aaKnown RBP21.26■□□□□ 0.99
CLN3-216ENST00000565316 PPATQ06203 517 aa21.26■□□□□ 0.99
CLN3-216ENST00000565316 SNAPC2Q13487 334 aa21.26■□□□□ 0.99
CLN3-216ENST00000565316 USP40Q9NVE5 1235 aa21.26■□□□□ 0.99
CLN3-216ENST00000565316 SRGAP3O43295 1099 aa21.25■□□□□ 0.99
CLN3-216ENST00000565316 INPP5BP32019 993 aa21.25■□□□□ 0.99
CLN3-216ENST00000565316 TIMM10P62072 90 aa21.25■□□□□ 0.99
CLN3-216ENST00000565316 ZGPATQ8N5A5 531 aaKnown RBP21.25■□□□□ 0.99
CLN3-216ENST00000565316 ARMC5Q96C12 935 aa21.25■□□□□ 0.99
CLN3-216ENST00000565316 GAKO14976 1311 aa21.24■□□□□ 0.99
CLN3-216ENST00000565316 BTBD19C9JJ37 291 aa21.24■□□□□ 0.99
CLN3-216ENST00000565316 IPO8O15397 1037 aaKnown RBP21.24■□□□□ 0.99
CLN3-216ENST00000565316 TRIM27P14373 513 aa21.24■□□□□ 0.99
CLN3-216ENST00000565316 TCP10Q12799 353 aa21.24■□□□□ 0.99
CLN3-216ENST00000565316 RASGRF1Q13972 1273 aa21.24■□□□□ 0.99
CLN3-216ENST00000565316 TLR2O60603 784 aa21.23■□□□□ 0.99
CLN3-216ENST00000565316 TFCP2Q12800 502 aa21.23■□□□□ 0.99
CLN3-216ENST00000565316 ARHGEF6Q15052 776 aa21.23■□□□□ 0.99
CLN3-216ENST00000565316 NOL9Q5SY16 702 aaKnown RBP21.23■□□□□ 0.99
CLN3-216ENST00000565316 FAM163AQ96GL9 167 aaPredicted RBP21.23■□□□□ 0.99
CLN3-216ENST00000565316 IDI2Q9BXS1 227 aa21.23■□□□□ 0.99
CLN3-216ENST00000565316 KCNH4Q9UQ05 1017 aa21.23■□□□□ 0.99
CLN3-216ENST00000565316 AKAP2Q9Y2D5 859 aa21.23■□□□□ 0.99
CLN3-216ENST00000565316 ATRNL1Q5VV63 1379 aa21.22■□□□□ 0.99
CLN3-216ENST00000565316 A0A1B0GUL7 405 aa21.22■□□□□ 0.99
CLN3-216ENST00000565316 WDHD1O75717 1129 aaPredicted RBP21.22■□□□□ 0.99
CLN3-216ENST00000565316 PRPF38BQ5VTL8 546 aaKnown RBP21.22■□□□□ 0.99
CLN3-216ENST00000565316 ATF7IPQ6VMQ6 1270 aa21.22■□□□□ 0.99
CLN3-216ENST00000565316 ZFPM1Q8IX07 1006 aa21.22■□□□□ 0.99
CLN3-216ENST00000565316 XAGE2Q96GT9 111 aa21.22■□□□□ 0.99
CLN3-216ENST00000565316 CENPFP49454 3210 aa21.22■□□□□ 0.99
CLN3-216ENST00000565316 RFX7Q2KHR2 1363 aa21.21■□□□□ 0.99
CLN3-216ENST00000565316 POTEFA5A3E0 1075 aa21.2■□□□□ 0.98
CLN3-216ENST00000565316 ENTPD3O75355 529 aa21.2■□□□□ 0.98
CLN3-216ENST00000565316 BCAR3O75815 825 aa21.2■□□□□ 0.98
CLN3-216ENST00000565316 GNAI2P04899 355 aa21.2■□□□□ 0.98
CLN3-216ENST00000565316 MVPQ14764 893 aaKnown RBP21.2■□□□□ 0.98
CLN3-216ENST00000565316 SPTY2D1Q68D10 685 aaPredicted RBP21.2■□□□□ 0.98
CLN3-216ENST00000565316 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.2■□□□□ 0.98
CLN3-216ENST00000565316 TNNQ9UQP3 1299 aa21.2■□□□□ 0.98
CLN3-216ENST00000565316 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.2■□□□□ 0.98
CLN3-216ENST00000565316 RGS3P49796 1198 aa21.19■□□□□ 0.98
CLN3-216ENST00000565316 MAP3K10Q02779 954 aa21.19■□□□□ 0.98
CLN3-216ENST00000565316 MOGSQ13724 837 aa21.19■□□□□ 0.98
CLN3-216ENST00000565316 ANKRD23Q86SG2 305 aa21.19■□□□□ 0.98
CLN3-216ENST00000565316 SLF2Q8IX21 1173 aa21.19■□□□□ 0.98
CLN3-216ENST00000565316 KIAA0100Q14667 2235 aaKnown RBP21.18■□□□□ 0.98
CLN3-216ENST00000565316 PHF20L1A8MW92 1017 aa21.18■□□□□ 0.98
CLN3-216ENST00000565316 DZIP1Q86YF9 867 aaKnown RBP21.18■□□□□ 0.98
CLN3-216ENST00000565316 ABCF2Q9UG63 623 aa21.18■□□□□ 0.98
CLN3-216ENST00000565316 LACTBP83111 547 aaPredicted RBP21.17■□□□□ 0.98
CLN3-216ENST00000565316 C17orf99Q6UX52 265 aa21.17■□□□□ 0.98
CLN3-216ENST00000565316 SH3BP5LQ7L8J4 393 aa21.17■□□□□ 0.98
CLN3-216ENST00000565316 ZNF384Q8TF68 577 aa21.17■□□□□ 0.98
CLN3-216ENST00000565316 FRAT1Q92837 279 aaPredicted RBP21.17■□□□□ 0.98
CLN3-216ENST00000565316 ZNF333Q96JL9 665 aa21.17■□□□□ 0.98
CLN3-216ENST00000565316 PTCH2Q9Y6C5 1203 aa21.17■□□□□ 0.98
CLN3-216ENST00000565316 MYH2Q9UKX2 1941 aa21.17■□□□□ 0.98
CLN3-216ENST00000565316 GPR75-ASB3A0A0A6YYF3 556 aa21.16■□□□□ 0.98
CLN3-216ENST00000565316 PNMA6EA0A0J9YXQ4 647 aa21.16■□□□□ 0.98
CLN3-216ENST00000565316 CXCL11O14625 94 aa21.16■□□□□ 0.98
CLN3-216ENST00000565316 GNRH1P01148 92 aa21.16■□□□□ 0.98
CLN3-216ENST00000565316 ARHGAP39Q9C0H5 1083 aa21.16■□□□□ 0.98
CLN3-216ENST00000565316 HMG20BQ9P0W2 317 aa21.16■□□□□ 0.98
CLN3-216ENST00000565316 MROH7-TTC4A0A0A0MT08 1334 aa21.16■□□□□ 0.98
CLN3-216ENST00000565316 ADGRA2Q96PE1 1338 aa21.16■□□□□ 0.98
CLN3-216ENST00000565316 RBBP6Q7Z6E9 1792 aaKnown RBP21.16■□□□□ 0.98
CLN3-216ENST00000565316 PDHXO00330 501 aa21.15■□□□□ 0.98
CLN3-216ENST00000565316 BTDP43251 543 aa21.15■□□□□ 0.98
CLN3-216ENST00000565316 MECOMQ03112 1051 aa21.15■□□□□ 0.98
CLN3-216ENST00000565316 KIF22Q14807 665 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms