RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 CDCA7LQ96GN5 454 aa16.19■□□□□ 0.18
SF3B3-202ENST00000562722 CEP126Q9P2H0 1117 aa16.19■□□□□ 0.18
SF3B3-202ENST00000562722 PTCH2Q9Y6C5 1203 aa16.19■□□□□ 0.18
SF3B3-202ENST00000562722 RPAP1Q9BWH6 1393 aaPredicted RBP16.18■□□□□ 0.18
SF3B3-202ENST00000562722 BTBD19C9JJ37 291 aa16.18■□□□□ 0.18
SF3B3-202ENST00000562722 ECM2O94769 699 aaPredicted RBP16.18■□□□□ 0.18
SF3B3-202ENST00000562722 LDHBP07195 334 aaKnown RBP16.18■□□□□ 0.18
SF3B3-202ENST00000562722 PPIL2Q13356 520 aa16.18■□□□□ 0.18
SF3B3-202ENST00000562722 ATG9AQ7Z3C6 839 aa16.18■□□□□ 0.18
SF3B3-202ENST00000562722 FAM151AQ8WW52 585 aa16.18■□□□□ 0.18
SF3B3-202ENST00000562722 DAGLAQ9Y4D2 1042 aa16.18■□□□□ 0.18
SF3B3-202ENST00000562722 TLR2O60603 784 aa16.17■□□□□ 0.18
SF3B3-202ENST00000562722 CIAO1O76071 339 aa16.17■□□□□ 0.18
SF3B3-202ENST00000562722 MYCP01106 439 aaPredicted RBP16.17■□□□□ 0.18
SF3B3-202ENST00000562722 EN2P19622 333 aaPredicted RBP16.17■□□□□ 0.18
SF3B3-202ENST00000562722 PRDX5P30044 214 aa16.17■□□□□ 0.18
SF3B3-202ENST00000562722 SLC4A8Q2Y0W8 1093 aa16.17■□□□□ 0.18
SF3B3-202ENST00000562722 NOB1Q9ULX3 412 aaKnown RBP16.17■□□□□ 0.18
SF3B3-202ENST00000562722 HDAC5Q9UQL6 1122 aa16.17■□□□□ 0.18
SF3B3-202ENST00000562722 INPP5BP32019 993 aa16.16■□□□□ 0.18
SF3B3-202ENST00000562722 PPATQ06203 517 aa16.16■□□□□ 0.18
SF3B3-202ENST00000562722 CDC42EP5Q6NZY7 148 aa16.16■□□□□ 0.18
SF3B3-202ENST00000562722 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.16■□□□□ 0.18
SF3B3-202ENST00000562722 GCC1Q96CN9 775 aa16.16■□□□□ 0.18
SF3B3-202ENST00000562722 ZNF333Q96JL9 665 aa16.16■□□□□ 0.18
SF3B3-202ENST00000562722 ZCCHC17Q9NP64 241 aaKnown RBP16.16■□□□□ 0.18
SF3B3-202ENST00000562722 USP40Q9NVE5 1235 aa16.16■□□□□ 0.18
SF3B3-202ENST00000562722 PCDH10Q9P2E7 1040 aa16.16■□□□□ 0.18
SF3B3-202ENST00000562722 FBXO3Q9UK99 471 aa16.16■□□□□ 0.18
SF3B3-202ENST00000562722 DENND2AQ9ULE3 1009 aa16.16■□□□□ 0.18
SF3B3-202ENST00000562722 LRRFIP2Q9Y608 721 aaKnown RBP16.16■□□□□ 0.18
SF3B3-202ENST00000562722 IL15P40933 162 aaPredicted RBP16.15■□□□□ 0.18
SF3B3-202ENST00000562722 LACTBP83111 547 aaPredicted RBP16.15■□□□□ 0.18
SF3B3-202ENST00000562722 NFIAQ12857 509 aa16.15■□□□□ 0.18
SF3B3-202ENST00000562722 API5Q9BZZ5 524 aaKnown RBP16.15■□□□□ 0.18
SF3B3-202ENST00000562722 ARHGAP39Q9C0H5 1083 aa16.15■□□□□ 0.18
SF3B3-202ENST00000562722 MYH13Q9UKX3 1938 aa16.14■□□□□ 0.17
SF3B3-202ENST00000562722 PHKA1P46020 1223 aa16.14■□□□□ 0.17
SF3B3-202ENST00000562722 CPA4Q9UI42 421 aa16.14■□□□□ 0.17
SF3B3-202ENST00000562722 PA2G4Q9UQ80 394 aaKnown RBP16.14■□□□□ 0.17
SF3B3-202ENST00000562722 PDHXO00330 501 aa16.13■□□□□ 0.17
SF3B3-202ENST00000562722 SEMA3EO15041 775 aa16.13■□□□□ 0.17
SF3B3-202ENST00000562722 DZIP1Q86YF9 867 aaKnown RBP16.13■□□□□ 0.17
SF3B3-202ENST00000562722 ZGPATQ8N5A5 531 aaKnown RBP16.13■□□□□ 0.17
SF3B3-202ENST00000562722 SH3TC2Q8TF17 1288 aa16.13■□□□□ 0.17
SF3B3-202ENST00000562722 HTTP42858 3142 aa16.13■□□□□ 0.17
SF3B3-202ENST00000562722 CT47B1P0C2W7 299 aaPredicted RBP16.12■□□□□ 0.17
SF3B3-202ENST00000562722 ADORA1P30542 326 aa16.12■□□□□ 0.17
SF3B3-202ENST00000562722 CCDC102BQ68D86 513 aa16.12■□□□□ 0.17
SF3B3-202ENST00000562722 ANKRD23Q86SG2 305 aa16.12■□□□□ 0.17
SF3B3-202ENST00000562722 ZSCAN29Q8IWY8 852 aaPredicted RBP16.12■□□□□ 0.17
SF3B3-202ENST00000562722 FAM198AQ9UFP1 575 aa16.12■□□□□ 0.17
SF3B3-202ENST00000562722 ABCF2Q9UG63 623 aa16.12■□□□□ 0.17
SF3B3-202ENST00000562722 ZNF112Q9UJU3 913 aa16.12■□□□□ 0.17
SF3B3-202ENST00000562722 SALL1Q9NSC2 1324 aa16.12■□□□□ 0.17
SF3B3-202ENST00000562722 RBBP6Q7Z6E9 1792 aaKnown RBP16.11■□□□□ 0.17
SF3B3-202ENST00000562722 FMNL1O95466 1100 aaPredicted RBP16.11■□□□□ 0.17
SF3B3-202ENST00000562722 GNRH1P01148 92 aa16.11■□□□□ 0.17
SF3B3-202ENST00000562722 MEIS3Q99687 375 aa16.11■□□□□ 0.17
SF3B3-202ENST00000562722 PICK1Q9NRD5 415 aa16.11■□□□□ 0.17
SF3B3-202ENST00000562722 PSMC4P43686 418 aa16.1■□□□□ 0.17
SF3B3-202ENST00000562722 RGS3P49796 1198 aa16.1■□□□□ 0.17
SF3B3-202ENST00000562722 PRMT2P55345 433 aa16.1■□□□□ 0.17
SF3B3-202ENST00000562722 NOL9Q5SY16 702 aaKnown RBP16.1■□□□□ 0.17
SF3B3-202ENST00000562722 C17orf99Q6UX52 265 aa16.1■□□□□ 0.17
SF3B3-202ENST00000562722 ZFPM1Q8IX07 1006 aa16.1■□□□□ 0.17
SF3B3-202ENST00000562722 SLF2Q8IX21 1173 aa16.1■□□□□ 0.17
SF3B3-202ENST00000562722 PARK7Q99497 189 aaKnown RBP16.1■□□□□ 0.17
SF3B3-202ENST00000562722 COPRSQ9NQ92 184 aa16.1■□□□□ 0.17
SF3B3-202ENST00000562722 KCNH4Q9UQ05 1017 aa16.1■□□□□ 0.17
SF3B3-202ENST00000562722 AK9Q5TCS8 1911 aa16.09■□□□□ 0.17
SF3B3-202ENST00000562722 SRGAP3O43295 1099 aa16.09■□□□□ 0.17
SF3B3-202ENST00000562722 HOXD10P28358 340 aa16.09■□□□□ 0.17
SF3B3-202ENST00000562722 TIMM10P62072 90 aa16.09■□□□□ 0.17
SF3B3-202ENST00000562722 PICALMQ13492 652 aa16.09■□□□□ 0.17
SF3B3-202ENST00000562722 RASGRF1Q13972 1273 aa16.09■□□□□ 0.17
SF3B3-202ENST00000562722 TRMT2AQ8IZ69 625 aaKnown RBP16.09■□□□□ 0.17
SF3B3-202ENST00000562722 RAET1EQ8TD07 263 aa16.09■□□□□ 0.17
SF3B3-202ENST00000562722 ZSWIM8A7E2V4 1837 aa16.09■□□□□ 0.17
SF3B3-202ENST00000562722 ENTPD3O75355 529 aa16.08■□□□□ 0.16
SF3B3-202ENST00000562722 GNAI3P08754 354 aa16.08■□□□□ 0.16
SF3B3-202ENST00000562722 HABP4Q5JVS0 413 aaKnown RBP16.08■□□□□ 0.16
SF3B3-202ENST00000562722 SPTY2D1Q68D10 685 aaPredicted RBP16.08■□□□□ 0.16
SF3B3-202ENST00000562722 TRIM47Q96LD4 638 aa16.08■□□□□ 0.16
SF3B3-202ENST00000562722 SRRDQ9UH36 339 aa16.08■□□□□ 0.16
SF3B3-202ENST00000562722 AKAP2Q9Y2D5 859 aa16.08■□□□□ 0.16
SF3B3-202ENST00000562722 ZHX2Q9Y6X8 837 aa16.08■□□□□ 0.16
SF3B3-202ENST00000562722 CENPFP49454 3210 aa16.08■□□□□ 0.16
SF3B3-202ENST00000562722 KIAA0100Q14667 2235 aaKnown RBP16.07■□□□□ 0.16
SF3B3-202ENST00000562722 A0A1B0GUL7 405 aa16.07■□□□□ 0.16
SF3B3-202ENST00000562722 CXCL11O14625 94 aa16.07■□□□□ 0.16
SF3B3-202ENST00000562722 CYP2C8P10632 490 aa16.07■□□□□ 0.16
SF3B3-202ENST00000562722 OSBPP22059 807 aa16.07■□□□□ 0.16
SF3B3-202ENST00000562722 BTDP43251 543 aa16.07■□□□□ 0.16
SF3B3-202ENST00000562722 RARSP54136 660 aaKnown RBP16.07■□□□□ 0.16
SF3B3-202ENST00000562722 TFCP2Q12800 502 aa16.07■□□□□ 0.16
SF3B3-202ENST00000562722 MVPQ14764 893 aaKnown RBP16.07■□□□□ 0.16
SF3B3-202ENST00000562722 GORABQ5T7V8 394 aa16.07■□□□□ 0.16
SF3B3-202ENST00000562722 GADL1Q6ZQY3 521 aa16.07■□□□□ 0.16
SF3B3-202ENST00000562722 SCYL3Q8IZE3 742 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms