RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 EREGO14944 169 aa4.34□□□□□ -1.71
SPG11-223ENST00000560858 FAM87AP0C7U9 286 aa4.34□□□□□ -1.71
SPG11-223ENST00000560858 FAM69CQ0P6D2 419 aa4.34□□□□□ -1.71
SPG11-223ENST00000560858 TTLL10Q6ZVT0 673 aa4.34□□□□□ -1.71
SPG11-223ENST00000560858 SYDE1Q6ZW31 735 aaPredicted RBP4.34□□□□□ -1.71
SPG11-223ENST00000560858 FAM181AQ8N9Y4 354 aa4.34□□□□□ -1.71
SPG11-223ENST00000560858 CLEC4MQ9H2X3 399 aaPredicted RBP4.34□□□□□ -1.71
SPG11-223ENST00000560858 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.34□□□□□ -1.71
SPG11-223ENST00000560858 ZNF503-AS2A6NEH8 195 aa4.33□□□□□ -1.72
SPG11-223ENST00000560858 NFIBO00712 420 aa4.33□□□□□ -1.72
SPG11-223ENST00000560858 PDGFAP04085 211 aa4.33□□□□□ -1.72
SPG11-223ENST00000560858 MZF1P28698 734 aaPredicted RBP4.33□□□□□ -1.72
SPG11-223ENST00000560858 CD96P40200 585 aa4.33□□□□□ -1.72
SPG11-223ENST00000560858 BUD31P41223 144 aaPredicted RBP4.33□□□□□ -1.72
SPG11-223ENST00000560858 PCDH1Q08174 1060 aa4.33□□□□□ -1.72
SPG11-223ENST00000560858 ECM1Q16610 540 aa4.33□□□□□ -1.72
SPG11-223ENST00000560858 NOM1Q5C9Z4 860 aaKnown RBP4.33□□□□□ -1.72
SPG11-223ENST00000560858 C1QL4Q86Z23 238 aa4.33□□□□□ -1.72
SPG11-223ENST00000560858 LMCD1Q9NZU5 365 aa4.33□□□□□ -1.72
SPG11-223ENST00000560858 SYNGAP1Q96PV0 1343 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 A0A096LPE4 126 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 A0A1W2PPZ6 126 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 A6NHS1 94 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 AOC2O75106 756 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 TNFRSF21O75509 655 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 AFMP43652 599 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 CDK5R2Q13319 367 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 ZNF423Q2M1K9 1284 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 MPZL3Q6UWV2 235 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 AMIGO3Q86WK7 504 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 SNX29Q8TEQ0 813 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 LIN37Q96GY3 246 aaPredicted RBP4.32□□□□□ -1.72
SPG11-223ENST00000560858 PIDD1Q9HB75 910 aa4.32□□□□□ -1.72
SPG11-223ENST00000560858 SLFN14P0C7P3 912 aa4.31□□□□□ -1.72
SPG11-223ENST00000560858 CTSWP56202 376 aa4.31□□□□□ -1.72
SPG11-223ENST00000560858 EHHADHQ08426 723 aa4.31□□□□□ -1.72
SPG11-223ENST00000560858 PDE3AQ14432 1141 aa4.31□□□□□ -1.72
SPG11-223ENST00000560858 PEAR1Q5VY43 1037 aaPredicted RBP4.31□□□□□ -1.72
SPG11-223ENST00000560858 ASB11Q8WXH4 323 aa4.31□□□□□ -1.72
SPG11-223ENST00000560858 CRIM1Q9NZV1 1036 aa4.31□□□□□ -1.72
SPG11-223ENST00000560858 ZMIZ1Q9ULJ6 1067 aa4.31□□□□□ -1.72
SPG11-223ENST00000560858 AMOTL2Q9Y2J4 779 aa4.31□□□□□ -1.72
SPG11-223ENST00000560858 SNX11Q9Y5W9 270 aa4.31□□□□□ -1.72
SPG11-223ENST00000560858 METTL12A8MUP2 240 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 CEACAM5P06731 702 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 CTSBP07858 339 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 C1QTNF9P0C862 333 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 USP5P45974 858 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 HNRNPUQ00839 825 aaKnown RBP eCLIP4.3□□□□□ -1.72
SPG11-223ENST00000560858 AAMPQ13685 434 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 ALKBH2Q6NS38 261 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 SMYD4Q8IYR2 804 aaPredicted RBP4.3□□□□□ -1.72
SPG11-223ENST00000560858 STK32AQ8WU08 396 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 KRTAP9-3Q9BYQ3 159 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 ATXN3LQ9H3M9 355 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 LATS2Q9NRM7 1088 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 PPP1R9AQ9ULJ8 1098 aa4.3□□□□□ -1.72
SPG11-223ENST00000560858 GLI1P08151 1106 aa4.29□□□□□ -1.72
SPG11-223ENST00000560858 TMEM253P0C7T8 217 aa4.29□□□□□ -1.72
SPG11-223ENST00000560858 OXCT1P55809 520 aa4.29□□□□□ -1.72
SPG11-223ENST00000560858 ZP2Q05996 745 aa4.29□□□□□ -1.72
SPG11-223ENST00000560858 IKZF1Q13422 519 aa4.29□□□□□ -1.72
SPG11-223ENST00000560858 TMEM67Q5HYA8 995 aa4.29□□□□□ -1.72
SPG11-223ENST00000560858 HELQQ8TDG4 1101 aa4.29□□□□□ -1.72
SPG11-223ENST00000560858 CLP1Q92989 425 aaKnown RBP4.29□□□□□ -1.72
SPG11-223ENST00000560858 WDR18Q9BV38 432 aa4.29□□□□□ -1.72
SPG11-223ENST00000560858 KRTAP17-1Q9BYP8 105 aa4.29□□□□□ -1.72
SPG11-223ENST00000560858 PRDM7Q9NQW5 492 aa4.29□□□□□ -1.72
SPG11-223ENST00000560858 SEPT3Q9UH03 358 aa4.29□□□□□ -1.72
SPG11-223ENST00000560858 RNGTTO60942 597 aaKnown RBP4.28□□□□□ -1.72
SPG11-223ENST00000560858 ECEL1O95672 775 aa4.28□□□□□ -1.72
SPG11-223ENST00000560858 EIF1AXP47813 144 aaKnown RBP4.28□□□□□ -1.72
SPG11-223ENST00000560858 AP3B2Q13367 1082 aa4.28□□□□□ -1.72
SPG11-223ENST00000560858 CIAPIN1Q6FI81 312 aa4.28□□□□□ -1.72
SPG11-223ENST00000560858 PRR23BQ6ZRT6 265 aa4.28□□□□□ -1.72
SPG11-223ENST00000560858 CCNJLQ8IV13 435 aa4.28□□□□□ -1.72
SPG11-223ENST00000560858 FBXO15Q8NCQ5 510 aaPredicted RBP4.28□□□□□ -1.72
SPG11-223ENST00000560858 DUSP23Q9BVJ7 150 aa4.28□□□□□ -1.72
SPG11-223ENST00000560858 PCOLCE2Q9UKZ9 415 aa4.28□□□□□ -1.72
SPG11-223ENST00000560858 POLIQ9UNA4 740 aa4.28□□□□□ -1.72
SPG11-223ENST00000560858 PLAGL2Q9UPG8 496 aa4.28□□□□□ -1.72
SPG11-223ENST00000560858 CTNND2Q9UQB3 1225 aa4.28□□□□□ -1.72
SPG11-223ENST00000560858 DCAF1Q9Y4B6 1507 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 NPIPB6E9PJ23 425 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 B3GALT4O96024 378 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 INHBBP09529 407 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 ITIH2P19823 946 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 GRIA4P48058 902 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 ID3Q02535 119 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 SPRED3Q2MJR0 410 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 CYFIP1Q7L576 1253 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 KIRREL1Q96J84 757 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 TRIM56Q9BRZ2 755 aaKnown RBP4.27□□□□□ -1.73
SPG11-223ENST00000560858 TNKS2Q9H2K2 1166 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 LIN7BQ9HAP6 207 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 ZFYVE28Q9HCC9 887 aa4.27□□□□□ -1.73
SPG11-223ENST00000560858 FOXD3Q9UJU5 478 aaPredicted RBP4.27□□□□□ -1.73
SPG11-223ENST00000560858 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.26□□□□□ -1.73
SPG11-223ENST00000560858 TMPRSS2O15393 492 aa4.26□□□□□ -1.73
SPG11-223ENST00000560858 LEFTY1O75610 366 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms