RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 FANCLQ9NW38 375 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 TRMT112Q9UI30 125 aaKnown RBP8.07□□□□□ -1.12
USP3-210ENST00000559192 ZFYP08048 801 aaPredicted RBP8.06□□□□□ -1.12
USP3-210ENST00000559192 TOB2Q14106 344 aaPredicted RBP8.06□□□□□ -1.12
USP3-210ENST00000559192 SAMD1Q6SPF0 538 aaPredicted RBP8.06□□□□□ -1.12
USP3-210ENST00000559192 GPIHBP1Q8IV16 184 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 NUTM2AQ8IVF1 878 aaPredicted RBP8.06□□□□□ -1.12
USP3-210ENST00000559192 KBTBD3Q8NAB2 608 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 CEP63Q96MT8 703 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 PLIN2Q99541 437 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 DDX21Q9NR30 783 aaKnown RBP eCLIP8.06□□□□□ -1.12
USP3-210ENST00000559192 SYNRGQ9UMZ2 1314 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 ADGRB3O60242 1522 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 HLTFQ14527 1009 aaKnown RBP eCLIP8.06□□□□□ -1.12
USP3-210ENST00000559192 CHRNA2Q15822 529 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 MYSM1Q5VVJ2 828 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 NSUN7Q8NE18 718 aaKnown RBP8.06□□□□□ -1.12
USP3-210ENST00000559192 METTL22Q9BUU2 404 aaPredicted RBP8.06□□□□□ -1.12
USP3-210ENST00000559192 PLEKHA4Q9H4M7 779 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 MAPK8IP1Q9UQF2 711 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 SLC4A4Q9Y6R1 1079 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 SETBP1Q9Y6X0 1596 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 METP08581 1390 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 SLC5A1P13866 664 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 POLA2Q14181 598 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 KRT40Q6A162 431 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 CTCFLQ8NI51 663 aaPredicted RBP8.06□□□□□ -1.12
USP3-210ENST00000559192 ANKRD7Q92527 254 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 PDE11AQ9HCR9 933 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 MYOM1P52179 1685 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 VIRMAQ69YN4 1812 aaKnown RBP8.06□□□□□ -1.12
USP3-210ENST00000559192 COBLO75128 1261 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 ATP5JP18859 108 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 STAT6P42226 847 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 SEPT6Q14141 434 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 GCKRQ14397 625 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 POSTNQ15063 836 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 SOGA3Q5TF21 947 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 WDR66Q8TBY9 1149 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 GOPCQ9HD26 462 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 BABAM1Q9NWV8 329 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 KCNJ14Q9UNX9 436 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 IQSEC3Q9UPP2 1182 aaPredicted RBP8.06□□□□□ -1.12
USP3-210ENST00000559192 ATP10DQ9P241 1426 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 REREQ9P2R6 1566 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 PNPLA6Q8IY17 1366 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 CYP21A2P08686 494 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 PDIA3P30101 505 aaKnown RBP8.06□□□□□ -1.12
USP3-210ENST00000559192 HNRNPH2P55795 449 aaKnown RBP8.06□□□□□ -1.12
USP3-210ENST00000559192 PRDM4Q9UKN5 801 aa8.06□□□□□ -1.12
USP3-210ENST00000559192 PSDA5PKW4 1024 aaPredicted RBP8.05□□□□□ -1.12
USP3-210ENST00000559192 ZEB2O60315 1214 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 ZNF174Q15697 407 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 FAM76AQ8TAV0 307 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 RBM28Q9NW13 759 aaKnown RBP8.05□□□□□ -1.12
USP3-210ENST00000559192 SERTAD1Q9UHV2 236 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 MCM7P33993 719 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 IGHMBP2P38935 993 aaKnown RBP8.05□□□□□ -1.12
USP3-210ENST00000559192 CCDC122Q5T0U0 273 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 SPECC1LQ69YQ0 1117 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 DHX40Q8IX18 779 aaKnown RBP8.05□□□□□ -1.12
USP3-210ENST00000559192 EHBP1Q8NDI1 1231 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 IP6K1Q92551 441 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 CCDC113Q9H0I3 377 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 EPC1Q9H2F5 836 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 CARMIL3Q8ND23 1372 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 CHD1O14646 1710 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 VWA3AA6NCI4 1184 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 TRIM75PA6NK02 468 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 NEURL1BA8MQ27 555 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 AP5Z1O43299 807 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 MYO1BO43795 1136 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 PNMA6AP0CW24 399 aaPredicted RBP8.05□□□□□ -1.12
USP3-210ENST00000559192 SETSIPP0DME0 302 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 SLFNL1Q499Z3 407 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 CNGA4Q8IV77 575 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 MIGA1Q8NAN2 632 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 STAMQ92783 540 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 KRT23Q9C075 422 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 RNF41Q9H4P4 317 aaPredicted RBP8.05□□□□□ -1.12
USP3-210ENST00000559192 CCDC194A0A1B0GVG4 234 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 MPHOSPH10O00566 681 aaKnown RBP8.05□□□□□ -1.12
USP3-210ENST00000559192 CUTAO60888 179 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 CTDSPL2Q05D32 466 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 IQCA1Q86XH1 822 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 MAGEB6Q8N7X4 407 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 RGS22Q8NE09 1264 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 SLF1Q9BQI6 1058 aa8.05□□□□□ -1.12
USP3-210ENST00000559192 HOXB7P09629 217 aa8.04□□□□□ -1.12
USP3-210ENST00000559192 ATP1A3P13637 1013 aa8.04□□□□□ -1.12
USP3-210ENST00000559192 CYLC1P35663 651 aaPredicted RBP8.04□□□□□ -1.12
USP3-210ENST00000559192 KRT2P35908 639 aa8.04□□□□□ -1.12
USP3-210ENST00000559192 USP5P45974 858 aa8.04□□□□□ -1.12
USP3-210ENST00000559192 ATP2B2Q01814 1243 aa8.04□□□□□ -1.12
USP3-210ENST00000559192 CMTR1Q8N1G2 835 aaKnown RBP8.04□□□□□ -1.12
USP3-210ENST00000559192 HINFPQ9BQA5 517 aa8.04□□□□□ -1.12
USP3-210ENST00000559192 TMOD3Q9NYL9 352 aa8.04□□□□□ -1.12
USP3-210ENST00000559192 HSPD1P10809 573 aaKnown RBP8.04□□□□□ -1.12
USP3-210ENST00000559192 GBP6Q6ZN66 633 aa8.04□□□□□ -1.12
USP3-210ENST00000559192 ANKLE2Q86XL3 938 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms