RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 NXPE3Q969Y0 559 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 PLD4Q96BZ4 506 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 NUCKS1Q9H1E3 243 aaKnown RBP4.5□□□□□ -1.69
TRAV28-201ENST00000557548 HCN2Q9UL51 889 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 PCDHB5Q9Y5E4 795 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 BNIP3LO60238 219 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 HOXD8P13378 290 aaPredicted RBP4.49□□□□□ -1.69
TRAV28-201ENST00000557548 IBSPP21815 317 aaPredicted RBP4.49□□□□□ -1.69
TRAV28-201ENST00000557548 CHMP4BP1P59074 171 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 IGBP1P78318 339 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 ATP11AP98196 1134 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 SEPT6Q14141 434 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 UBAP2LQ14157 1087 aaKnown RBP4.49□□□□□ -1.69
TRAV28-201ENST00000557548 RPS26P11Q5JNZ5 115 aaPredicted RBP4.49□□□□□ -1.69
TRAV28-201ENST00000557548 RASIP1Q5U651 963 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 HFE2Q6ZVN8 426 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 FILIP1Q7Z7B0 1213 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 TMEM102Q8N9M5 508 aaPredicted RBP4.49□□□□□ -1.69
TRAV28-201ENST00000557548 SH3TC2Q8TF17 1288 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 JARID2Q92833 1246 aaPredicted RBP4.49□□□□□ -1.69
TRAV28-201ENST00000557548 ABHD17AQ96GS6 310 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 FERD3LQ96RJ6 166 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 DNAJC7Q99615 494 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 CHMP4AQ9BY43 222 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 LRRC3Q9BY71 257 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 MUC3BQ9H195 1237 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 MIR1-1HGQ9H1L0 117 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 RASSF4Q9H2L5 321 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 KANSL2Q9H9L4 492 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 RRAGCQ9HB90 399 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 CWC22Q9HCG8 908 aaKnown RBP4.49□□□□□ -1.69
TRAV28-201ENST00000557548 ST7Q9NRC1 585 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 TMEM39AQ9NV64 488 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 ACTR10Q9NZ32 417 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 MARK1Q9P0L2 795 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 ROBO2Q9HCK4 1378 aa4.49□□□□□ -1.69
TRAV28-201ENST00000557548 J3QW42 95 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 CDC45O75419 566 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 TRIM37O94972 964 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 GIPRP48546 466 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 NRLP54845 237 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 ANAPC15P60006 121 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 DDR2Q16832 855 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 CWF19L2Q2TBE0 894 aaKnown RBP4.48□□□□□ -1.69
TRAV28-201ENST00000557548 GK5Q6ZS86 529 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 LRP10Q7Z4F1 713 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 MICAL1Q8TDZ2 1067 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 GATAD2BQ8WXI9 593 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 FANCLQ9NW38 375 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 MAPK8IP1Q9UQF2 711 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 MSRB2Q9Y3D2 182 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 RNF114Q9Y508 228 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 COL4A3BPQ9Y5P4 624 aa4.48□□□□□ -1.69
TRAV28-201ENST00000557548 LOC102724428A0A0B4J2F2 783 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 ESYT3A0FGR9 886 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 FAM221AA4D161 298 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 ZBTB42B2RXF5 422 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 MARCH6O60337 910 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 ZNF165P49910 485 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 SIK1P57059 783 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 GPLD1P80108 840 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 PPP2R3AQ06190 1150 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 TBC1D8BQ0IIM8 1120 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 IFRD2Q12894 506 aaPredicted RBP4.47□□□□□ -1.69
TRAV28-201ENST00000557548 MPP2Q14168 576 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 PLEKHG4Q58EX7 1191 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 LARP1BQ659C4 914 aaKnown RBP4.47□□□□□ -1.69
TRAV28-201ENST00000557548 FOXR1Q6PIV2 292 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 LINC00114Q6XXX2 140 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 REC114Q7Z4M0 266 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 CCDC84Q86UT8 332 aaPredicted RBP4.47□□□□□ -1.69
TRAV28-201ENST00000557548 LILRB2Q8N423 598 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 ZCRB1Q8TBF4 217 aaKnown RBP4.47□□□□□ -1.69
TRAV28-201ENST00000557548 CRBNQ96SW2 442 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 PBX4Q9BYU1 374 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 CCDC113Q9H0I3 377 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 IGFLR1Q9H665 355 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 EFCC1Q9HA90 598 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 BRMS1Q9HCU9 246 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 NDFIP2Q9NV92 336 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 IFT57Q9NWB7 429 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 ZNRF3Q9ULT6 936 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 NSFL1CQ9UNZ2 370 aaKnown RBP4.47□□□□□ -1.69
TRAV28-201ENST00000557548 NOP58Q9Y2X3 529 aaKnown RBP4.47□□□□□ -1.69
TRAV28-201ENST00000557548 SAMM50Q9Y512 469 aa4.47□□□□□ -1.69
TRAV28-201ENST00000557548 H7C1W4 665 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 GNB5O14775 395 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 PDPK1O15530 556 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 DNAJC6O75061 913 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 CILPO75339 1184 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 BPNT1O95861 308 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 GHRHP01286 108 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 EIF2AK2P19525 551 aaKnown RBP4.46□□□□□ -1.7
TRAV28-201ENST00000557548 BMP6P22004 513 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 CLCQ05315 142 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 PCDH1Q08174 1060 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 DBN1Q16643 649 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 LSRQ86X29 649 aaPredicted RBP4.46□□□□□ -1.7
TRAV28-201ENST00000557548 SULF2Q8IWU5 870 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 OR6P1Q8NGX9 317 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms