RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 GSDMDP57764 484 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 TTLL7Q6ZT98 887 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 MICALL2Q8IY33 904 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 FBXO18Q8NFZ0 1043 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 KHSRPQ92945 711 aaKnown RBP eCLIP6.29□□□□□ -1.4
LIMA1-212ENST00000552491 BPIFA3Q9BQP9 254 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 NAT10Q9H0A0 1025 aaKnown RBP6.29□□□□□ -1.4
LIMA1-212ENST00000552491 POLR3EQ9NVU0 708 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 IMPACTQ9P2X3 320 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 LMTK3Q96Q04 1460 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 KLF18A0A0U1RQI7 1052 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 A0A1B0GUL7 405 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 PSDA5PKW4 1024 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-212ENST00000552491 SLC3A2P08195 630 aaKnown RBP6.29□□□□□ -1.4
LIMA1-212ENST00000552491 IFIT1P09914 478 aaKnown RBP6.29□□□□□ -1.4
LIMA1-212ENST00000552491 PFKFB1P16118 471 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 MARCKSP29966 332 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-212ENST00000552491 ADORA1P30542 326 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 NLRP12P59046 1061 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 FANCCQ00597 558 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 SCARF1Q14162 830 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 SF3A1Q15459 793 aaKnown RBP6.29□□□□□ -1.4
LIMA1-212ENST00000552491 TRIM65Q6PJ69 517 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 TICAM2Q86XR7 235 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 CHMP4CQ96CF2 233 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 C8orf76Q96K31 380 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 NLRP2Q9NX02 1062 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 ORC3Q9UBD5 711 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-212ENST00000552491 FHOD1Q9Y613 1164 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 TJP1Q07157 1748 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 TMEM232C9JQI7 657 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 YEATS4O95619 227 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 FGAP02671 866 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 SFPQP23246 707 aaKnown RBP eCLIP6.28□□□□□ -1.4
LIMA1-212ENST00000552491 KIF23Q02241 960 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-212ENST00000552491 GORABQ5T7V8 394 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 PI16Q6UXB8 463 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 MB21D2Q8IYB1 491 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-212ENST00000552491 FBXL16Q8N461 479 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 PLBD2Q8NHP8 589 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 KCNG4Q8TDN1 519 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 RAPGEF4Q8WZA2 1011 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.28□□□□□ -1.4
LIMA1-212ENST00000552491 DDX60Q8IY21 1712 aaKnown RBP6.28□□□□□ -1.4
LIMA1-212ENST00000552491 TRPM3Q9HCF6 1732 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-212ENST00000552491 C4AP0C0L4 1744 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 C4BP0C0L5 1744 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 GOLGA8BA8MQT2 603 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 UBE2Q2LH0YL09 131 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 PRC1O43663 620 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 PLA2G4AP47712 749 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 FKBP4Q02790 459 aaKnown RBP eCLIP6.28□□□□□ -1.4
LIMA1-212ENST00000552491 TAF3Q5VWG9 929 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 ANO1Q5XXA6 986 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 FOXP4Q8IVH2 680 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-212ENST00000552491 CCDC150Q8NCX0 1101 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 PUS7LQ9H0K6 701 aaKnown RBP6.28□□□□□ -1.4
LIMA1-212ENST00000552491 EPC1Q9H2F5 836 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 PLA2G2EQ9NZK7 142 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 TAOK2Q9UL54 1235 aa6.28□□□□□ -1.4
LIMA1-212ENST00000552491 EYA2O00167 538 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 RXRAP19793 462 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 CMA1P23946 247 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 IL15P40933 162 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-212ENST00000552491 ETF1P62495 437 aaKnown RBP6.27□□□□□ -1.41
LIMA1-212ENST00000552491 LSM11P83369 360 aaKnown RBP eCLIP6.27□□□□□ -1.41
LIMA1-212ENST00000552491 DHX8Q14562 1220 aaKnown RBP6.27□□□□□ -1.41
LIMA1-212ENST00000552491 ARHGAP29Q52LW3 1261 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 SHC4Q6S5L8 630 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 KRT28Q7Z3Y7 464 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 REXO1L1PQ8IX06 675 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 TTC5Q8N0Z6 440 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 DDX17Q92841 729 aaKnown RBP6.27□□□□□ -1.41
LIMA1-212ENST00000552491 CLIC6Q96NY7 704 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 NBPF3Q9H094 633 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 SENP2Q9HC62 589 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 GPR108Q9NPR9 543 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 INTS13Q9NVM9 706 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 DNAI1Q9UI46 699 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 A0A0U1RQG5 324 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-212ENST00000552491 ERICH4A6NGS2 130 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 ZRANB2O95218 330 aaKnown RBP eCLIP6.27□□□□□ -1.41
LIMA1-212ENST00000552491 TUBB4AP04350 444 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 PNMA6AP0CW24 399 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-212ENST00000552491 TATP17735 454 aaPredicted RBP6.27□□□□□ -1.41
LIMA1-212ENST00000552491 BMP6P22004 513 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 CDC27P30260 824 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 KCNJ6P48051 423 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 PNOCQ13519 176 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 TMEM139Q8IV31 216 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 IFNL2Q8IZJ0 200 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 TMX1Q9H3N1 280 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 TUBE1Q9UJT0 475 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 HPSEQ9Y251 543 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 TMEM94Q12767 1356 aa6.27□□□□□ -1.41
LIMA1-212ENST00000552491 MYO5AQ9Y4I1 1855 aaKnown RBP6.27□□□□□ -1.41
LIMA1-212ENST00000552491 NUP188Q5SRE5 1749 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 FOXN1O15353 648 aa6.26□□□□□ -1.41
LIMA1-212ENST00000552491 SEC31AO94979 1220 aaKnown RBP6.26□□□□□ -1.41
LIMA1-212ENST00000552491 A1BGP04217 495 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms