RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 MTMR14Q8NCE2 650 aa13.99□□□□□ -0.17
YBX3-213ENST00000542641 DAGLAQ9Y4D2 1042 aa13.99□□□□□ -0.17
YBX3-213ENST00000542641 PCDHAC2Q9Y5I4 1007 aa13.99□□□□□ -0.17
YBX3-213ENST00000542641 GAKO14976 1311 aa13.98□□□□□ -0.17
YBX3-213ENST00000542641 GPR75-ASB3A0A0A6YYF3 556 aa13.98□□□□□ -0.17
YBX3-213ENST00000542641 BAG3O95817 575 aa13.98□□□□□ -0.17
YBX3-213ENST00000542641 BTDP43251 543 aa13.98□□□□□ -0.17
YBX3-213ENST00000542641 APOBEC3HQ6NTF7 200 aaKnown RBP13.98□□□□□ -0.17
YBX3-213ENST00000542641 USP50Q70EL3 339 aaPredicted RBP13.98□□□□□ -0.17
YBX3-213ENST00000542641 ADGRA1Q86SQ6 560 aa13.98□□□□□ -0.17
YBX3-213ENST00000542641 MIGA1Q8NAN2 632 aa13.98□□□□□ -0.17
YBX3-213ENST00000542641 TRPM4Q8TD43 1214 aa13.98□□□□□ -0.17
YBX3-213ENST00000542641 APPBP2Q92624 585 aa13.98□□□□□ -0.17
YBX3-213ENST00000542641 PRMT6Q96LA8 375 aaPredicted RBP13.98□□□□□ -0.17
YBX3-213ENST00000542641 TAF1DQ9H5J8 278 aaPredicted RBP13.98□□□□□ -0.17
YBX3-213ENST00000542641 NMRK2Q9NPI5 230 aa13.98□□□□□ -0.17
YBX3-213ENST00000542641 DIAPH3Q9NSV4 1193 aa13.98□□□□□ -0.17
YBX3-213ENST00000542641 MAGEB6P1A0A0J9YX57 407 aa13.97□□□□□ -0.17
YBX3-213ENST00000542641 WNT10BO00744 389 aa13.97□□□□□ -0.17
YBX3-213ENST00000542641 MYO1BO43795 1136 aa13.97□□□□□ -0.17
YBX3-213ENST00000542641 HIRAP54198 1017 aaPredicted RBP13.97□□□□□ -0.17
YBX3-213ENST00000542641 NBPF9Q3BBW0 867 aa13.97□□□□□ -0.17
YBX3-213ENST00000542641 ZMYM1Q5SVZ6 1142 aa13.97□□□□□ -0.17
YBX3-213ENST00000542641 PNMA8AQ86V59 439 aaPredicted RBP13.97□□□□□ -0.17
YBX3-213ENST00000542641 ZBED3Q96IU2 234 aaPredicted RBP13.97□□□□□ -0.17
YBX3-213ENST00000542641 GPBP1L1Q9HC44 474 aaPredicted RBP13.97□□□□□ -0.17
YBX3-213ENST00000542641 AATFQ9NY61 560 aaKnown RBP eCLIP13.97□□□□□ -0.17
YBX3-213ENST00000542641 RFX7Q2KHR2 1363 aa13.96□□□□□ -0.17
YBX3-213ENST00000542641 WDR90Q96KV7 1748 aa13.96□□□□□ -0.17
YBX3-213ENST00000542641 PPP4CP60510 307 aa13.96□□□□□ -0.17
YBX3-213ENST00000542641 DYNLL1P63167 89 aaKnown RBP13.96□□□□□ -0.17
YBX3-213ENST00000542641 NMIQ13287 307 aaPredicted RBP13.96□□□□□ -0.17
YBX3-213ENST00000542641 EAPPQ56P03 285 aaPredicted RBP13.96□□□□□ -0.17
YBX3-213ENST00000542641 OSBP2Q969R2 916 aa13.96□□□□□ -0.17
YBX3-213ENST00000542641 AIDAQ96BJ3 306 aa13.96□□□□□ -0.17
YBX3-213ENST00000542641 FAM227BQ96M60 508 aa13.96□□□□□ -0.17
YBX3-213ENST00000542641 PUS7LQ9H0K6 701 aaKnown RBP13.96□□□□□ -0.17
YBX3-213ENST00000542641 TDRD3Q9H7E2 651 aaKnown RBP13.96□□□□□ -0.17
YBX3-213ENST00000542641 USP40Q9NVE5 1235 aa13.96□□□□□ -0.17
YBX3-213ENST00000542641 DOCK2Q92608 1830 aa13.96□□□□□ -0.17
YBX3-213ENST00000542641 PLCG2P16885 1265 aa13.95□□□□□ -0.18
YBX3-213ENST00000542641 CHMLP26374 656 aa13.95□□□□□ -0.18
YBX3-213ENST00000542641 CDC42EP5Q6NZY7 148 aa13.95□□□□□ -0.18
YBX3-213ENST00000542641 CWC27Q6UX04 472 aaKnown RBP13.95□□□□□ -0.18
YBX3-213ENST00000542641 CHRDL2Q6WN34 429 aa13.95□□□□□ -0.18
YBX3-213ENST00000542641 CERS3Q8IU89 383 aa13.95□□□□□ -0.18
YBX3-213ENST00000542641 SEC62Q99442 399 aaKnown RBP13.95□□□□□ -0.18
YBX3-213ENST00000542641 HELLSQ9NRZ9 838 aa13.95□□□□□ -0.18
YBX3-213ENST00000542641 MYO5AQ9Y4I1 1855 aaKnown RBP13.95□□□□□ -0.18
YBX3-213ENST00000542641 A0A0D9SFI3 127 aa13.94□□□□□ -0.18
YBX3-213ENST00000542641 CLRN2A0PK11 232 aa13.94□□□□□ -0.18
YBX3-213ENST00000542641 M0R2C6 588 aa13.94□□□□□ -0.18
YBX3-213ENST00000542641 CDC45O75419 566 aa13.94□□□□□ -0.18
YBX3-213ENST00000542641 MBD4O95243 580 aa13.94□□□□□ -0.18
YBX3-213ENST00000542641 MCMDC2Q4G0Z9 681 aa13.94□□□□□ -0.18
YBX3-213ENST00000542641 CASC1Q6TDU7 716 aa13.94□□□□□ -0.18
YBX3-213ENST00000542641 SH3RF3Q8TEJ3 882 aaPredicted RBP13.94□□□□□ -0.18
YBX3-213ENST00000542641 RIOK1Q9BRS2 568 aaKnown RBP13.94□□□□□ -0.18
YBX3-213ENST00000542641 ARMT1Q9H993 441 aa13.94□□□□□ -0.18
YBX3-213ENST00000542641 TMOD2Q9NZR1 351 aa13.94□□□□□ -0.18
YBX3-213ENST00000542641 ZNF70Q9UC06 446 aaPredicted RBP13.94□□□□□ -0.18
YBX3-213ENST00000542641 MAST2Q6P0Q8 1798 aa13.94□□□□□ -0.18
YBX3-213ENST00000542641 ASTN2O75129 1339 aaPredicted RBP13.93□□□□□ -0.18
YBX3-213ENST00000542641 SCN4AP35499 1836 aa13.93□□□□□ -0.18
YBX3-213ENST00000542641 GPAA1O43292 621 aa13.93□□□□□ -0.18
YBX3-213ENST00000542641 CACNB3P54284 484 aa13.93□□□□□ -0.18
YBX3-213ENST00000542641 RHBDL3P58872 404 aa13.93□□□□□ -0.18
YBX3-213ENST00000542641 ANGEL2Q5VTE6 544 aaKnown RBP13.93□□□□□ -0.18
YBX3-213ENST00000542641 TEX11Q8IYF3 940 aa13.93□□□□□ -0.18
YBX3-213ENST00000542641 LCORLQ8N3X6 602 aa13.93□□□□□ -0.18
YBX3-213ENST00000542641 ZC3H15Q8WU90 426 aaKnown RBP13.93□□□□□ -0.18
YBX3-213ENST00000542641 RUFY2Q8WXA3 655 aa13.93□□□□□ -0.18
YBX3-213ENST00000542641 CRNKL1Q9BZJ0 848 aaKnown RBP13.93□□□□□ -0.18
YBX3-213ENST00000542641 VEZTQ9HBM0 779 aa13.93□□□□□ -0.18
YBX3-213ENST00000542641 MYH2Q9UKX2 1941 aa13.92□□□□□ -0.18
YBX3-213ENST00000542641 PRR29P0C7W0 189 aa13.92□□□□□ -0.18
YBX3-213ENST00000542641 CCDC129Q6ZRS4 1044 aa13.92□□□□□ -0.18
YBX3-213ENST00000542641 ZNF784Q8NCA9 323 aaPredicted RBP13.92□□□□□ -0.18
YBX3-213ENST00000542641 DCPSQ96C86 337 aaKnown RBP13.92□□□□□ -0.18
YBX3-213ENST00000542641 STRBPQ96SI9 672 aaKnown RBP13.92□□□□□ -0.18
YBX3-213ENST00000542641 GGA3Q9NZ52 723 aa13.92□□□□□ -0.18
YBX3-213ENST00000542641 ADAMTSL1Q8N6G6 1762 aa13.91□□□□□ -0.18
YBX3-213ENST00000542641 TCP10L2B9ZVM9 353 aa13.91□□□□□ -0.18
YBX3-213ENST00000542641 WDHD1O75717 1129 aaPredicted RBP13.91□□□□□ -0.18
YBX3-213ENST00000542641 POTEIP0CG38 1075 aa13.91□□□□□ -0.18
YBX3-213ENST00000542641 POTEJP0CG39 1038 aa13.91□□□□□ -0.18
YBX3-213ENST00000542641 GNAT2P19087 354 aa13.91□□□□□ -0.18
YBX3-213ENST00000542641 USP5P45974 858 aa13.91□□□□□ -0.18
YBX3-213ENST00000542641 MFAP1P55081 439 aaKnown RBP13.91□□□□□ -0.18
YBX3-213ENST00000542641 PICALMQ13492 652 aa13.91□□□□□ -0.18
YBX3-213ENST00000542641 FKBP1CQ5VVH2 108 aa13.91□□□□□ -0.18
YBX3-213ENST00000542641 APOBEC3FQ8IUX4 373 aaKnown RBP13.91□□□□□ -0.18
YBX3-213ENST00000542641 TGFBRAP1Q8WUH2 860 aa13.91□□□□□ -0.18
YBX3-213ENST00000542641 PGAP2Q9UHJ9 254 aa13.91□□□□□ -0.18
YBX3-213ENST00000542641 SLC4A4Q9Y6R1 1079 aa13.91□□□□□ -0.18
YBX3-213ENST00000542641 PRKAB2O43741 272 aa13.9□□□□□ -0.18
YBX3-213ENST00000542641 APPP05067 770 aa13.9□□□□□ -0.18
YBX3-213ENST00000542641 TNNI2P48788 182 aa13.9□□□□□ -0.18
YBX3-213ENST00000542641 NFIAQ12857 509 aa13.9□□□□□ -0.18
YBX3-213ENST00000542641 TNFAIP1Q13829 316 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms