RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 RCAN3Q9UKA8 241 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 LRFN2Q9ULH4 789 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 SBF2Q86WG5 1849 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 UBR2Q8IWV8 1755 aa5.34□□□□□ -1.56
CD44-226ENST00000527889 NCAPD2Q15021 1401 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 AK9Q5TCS8 1911 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 RNF123Q5XPI4 1314 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 FAM83GA6ND36 823 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 ZBTB39O15060 712 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 PSMD2Q13200 908 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 AAMPQ13685 434 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 DCTN1Q14203 1278 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 MTFR1Q15390 333 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 ENOX2Q16206 610 aaKnown RBP5.33□□□□□ -1.56
CD44-226ENST00000527889 NBPF6Q5VWK0 638 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 WDR63Q8IWG1 891 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 ANKRD24Q8TF21 1146 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 MYO19Q96H55 970 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 NBPF4Q96M43 638 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 TGIF2Q9GZN2 237 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 GMPR2Q9P2T1 348 aaKnown RBP5.33□□□□□ -1.56
CD44-226ENST00000527889 LAS1LQ9Y4W2 734 aaKnown RBP5.33□□□□□ -1.56
CD44-226ENST00000527889 DOT1LQ8TEK3 1739 aa5.33□□□□□ -1.56
CD44-226ENST00000527889 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.33□□□□□ -1.56
CD44-226ENST00000527889 BRWD3Q6RI45 1802 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 CASZ1Q86V15 1759 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 FANCIQ9NVI1 1328 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 A6NJY4 79 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 PLIN1O60240 522 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 LILRA1O75019 489 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 GNRH1P01148 92 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 SMTNP53814 917 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 RRP1P56182 461 aaKnown RBP5.32□□□□□ -1.56
CD44-226ENST00000527889 PSMA6P60900 246 aaKnown RBP5.32□□□□□ -1.56
CD44-226ENST00000527889 ATP2B2Q01814 1243 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 CBLBQ13191 982 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 MTHFSDQ2M296 383 aaKnown RBP5.32□□□□□ -1.56
CD44-226ENST00000527889 CYP2U1Q7Z449 544 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 ATCAYQ86WG3 371 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 GJD3Q8N144 294 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 SLC43A3Q8NBI5 491 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 RNF34Q969K3 372 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 NIF3L1Q9GZT8 377 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 VTI1BQ9UEU0 232 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 MEGF6O75095 1541 aa5.32□□□□□ -1.56
CD44-226ENST00000527889 COL5A2P05997 1499 aaPredicted RBP5.32□□□□□ -1.56
CD44-226ENST00000527889 CPDO75976 1380 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 PAPPAQ13219 1627 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 IL16Q14005 1332 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 EXOSC9Q06265 439 aaKnown RBP5.31□□□□□ -1.56
CD44-226ENST00000527889 DHX9Q08211 1270 aaKnown RBP5.31□□□□□ -1.56
CD44-226ENST00000527889 MCM10Q7L590 875 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 DPH6Q7L8W6 267 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 MEIOBQ8N635 442 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 TANGO6Q9C0B7 1094 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 MYH16Q9H6N6 1097 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 PRDM11Q9NQV5 511 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 NLRP2Q9NX02 1062 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 POLIQ9UNA4 740 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 USP3Q9Y6I4 520 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 CRB1P82279 1406 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 MYH3P11055 1940 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 CHD4Q14839 1912 aa5.31□□□□□ -1.56
CD44-226ENST00000527889 MAP3K5Q99683 1374 aa5.3□□□□□ -1.56
CD44-226ENST00000527889 NUP98P52948 1817 aa5.3□□□□□ -1.56
CD44-226ENST00000527889 MYH14Q7Z406 1995 aaKnown RBP5.3□□□□□ -1.56
CD44-226ENST00000527889 PNMA6FA0A0J9YX94 578 aa5.3□□□□□ -1.56
CD44-226ENST00000527889 BCAR3O75815 825 aa5.3□□□□□ -1.56
CD44-226ENST00000527889 CLSTN1O94985 981 aa5.3□□□□□ -1.56
CD44-226ENST00000527889 ADD1P35611 737 aaKnown RBP5.3□□□□□ -1.56
CD44-226ENST00000527889 ZNF76P36508 570 aa5.3□□□□□ -1.56
CD44-226ENST00000527889 LMOD3Q0VAK6 560 aa5.3□□□□□ -1.56
CD44-226ENST00000527889 ALG1LQ6GMV1 187 aa5.3□□□□□ -1.56
CD44-226ENST00000527889 MRPL14Q6P1L8 145 aaKnown RBP5.3□□□□□ -1.56
CD44-226ENST00000527889 KDF1Q8NAX2 398 aaPredicted RBP5.3□□□□□ -1.56
CD44-226ENST00000527889 XAGE2Q96GT9 111 aa5.3□□□□□ -1.56
CD44-226ENST00000527889 CFHR5Q9BXR6 569 aa5.3□□□□□ -1.56
CD44-226ENST00000527889 CCSER2Q9H7U1 834 aa5.3□□□□□ -1.56
CD44-226ENST00000527889 IQSEC3Q9UPP2 1182 aaPredicted RBP5.3□□□□□ -1.56
CD44-226ENST00000527889 ARFGEF2Q9Y6D5 1785 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 GNAT3A8MTJ3 354 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 EML1O00423 815 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 CDK2AP1O14519 115 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 IL2RAP01589 272 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 ZNF853P0CG23 659 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 SNRPBP14678 240 aaKnown RBP5.29□□□□□ -1.56
CD44-226ENST00000527889 MZF1P28698 734 aaPredicted RBP5.29□□□□□ -1.56
CD44-226ENST00000527889 GNA15P30679 374 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 RARSP54136 660 aaKnown RBP5.29□□□□□ -1.56
CD44-226ENST00000527889 HIRAP54198 1017 aaPredicted RBP5.29□□□□□ -1.56
CD44-226ENST00000527889 GNAI1P63096 354 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 C20orf194Q5TEA3 1177 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 ZNF787Q6DD87 383 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 ZNF530Q6P9A1 599 aaPredicted RBP5.29□□□□□ -1.56
CD44-226ENST00000527889 GIMAP6Q6P9H5 292 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 Q6ZVU0 165 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 ETFBKMTQ8IXQ9 262 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 EXOC6Q8TAG9 804 aa5.29□□□□□ -1.56
CD44-226ENST00000527889 RTF1Q92541 710 aaKnown RBP5.29□□□□□ -1.56
CD44-226ENST00000527889 AGBL1Q96MI9 1066 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 163.9 ms