RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 GGA3Q9NZ52 723 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 NOB1Q9ULX3 412 aaKnown RBP10.02□□□□□ -0.81
SCN1A-207ENST00000507401 PPP1R3GB7ZBB8 358 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 ADM5C9JUS6 153 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 SNAP23O00161 211 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 CA12O43570 354 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 PLIN1O60240 522 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 RARSP54136 660 aaKnown RBP10.01□□□□□ -0.81
SCN1A-207ENST00000507401 NOGQ13253 232 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 NBPF9Q3BBW0 867 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 RGMBQ6NW40 437 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 DLK2Q6UY11 383 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 TDRD7Q8NHU6 1098 aaKnown RBP10.01□□□□□ -0.81
SCN1A-207ENST00000507401 CDCA5Q96FF9 252 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 ZBED3Q96IU2 234 aaPredicted RBP10.01□□□□□ -0.81
SCN1A-207ENST00000507401 MXD3Q9BW11 206 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 PUS3Q9BZE2 481 aaKnown RBP10.01□□□□□ -0.81
SCN1A-207ENST00000507401 ASTN2O75129 1339 aaPredicted RBP10.01□□□□□ -0.81
SCN1A-207ENST00000507401 FAM205AQ6ZU69 1335 aa10.01□□□□□ -0.81
SCN1A-207ENST00000507401 ZNF646O15015 1829 aaPredicted RBP10□□□□□ -0.81
SCN1A-207ENST00000507401 PDE8BO95263 885 aa10□□□□□ -0.81
SCN1A-207ENST00000507401 HIBADHP31937 336 aaKnown RBP10□□□□□ -0.81
SCN1A-207ENST00000507401 FBXO33Q7Z6M2 555 aa10□□□□□ -0.81
SCN1A-207ENST00000507401 KIAA0825Q8IV33 1275 aa10□□□□□ -0.81
SCN1A-207ENST00000507401 TNS4Q8IZW8 715 aa10□□□□□ -0.81
SCN1A-207ENST00000507401 FAM84BQ96KN1 310 aaPredicted RBP10□□□□□ -0.81
SCN1A-207ENST00000507401 THSD7BQ9C0I4 1608 aa10□□□□□ -0.81
SCN1A-207ENST00000507401 A0A1B0GUL6 1792 aa9.99□□□□□ -0.81
SCN1A-207ENST00000507401 IPO8O15397 1037 aaKnown RBP9.99□□□□□ -0.81
SCN1A-207ENST00000507401 AOC2O75106 756 aa9.99□□□□□ -0.81
SCN1A-207ENST00000507401 ANP32AP39687 249 aaKnown RBP9.99□□□□□ -0.81
SCN1A-207ENST00000507401 GRM1Q13255 1194 aa9.99□□□□□ -0.81
SCN1A-207ENST00000507401 DLGAP5Q15398 846 aa9.99□□□□□ -0.81
SCN1A-207ENST00000507401 C6orf132Q5T0Z8 1188 aa9.99□□□□□ -0.81
SCN1A-207ENST00000507401 INTS3Q68E01 1043 aaKnown RBP9.99□□□□□ -0.81
SCN1A-207ENST00000507401 APOBEC3FQ8IUX4 373 aaKnown RBP9.99□□□□□ -0.81
SCN1A-207ENST00000507401 CERS5Q8N5B7 392 aa9.99□□□□□ -0.81
SCN1A-207ENST00000507401 VGLL2Q8N8G2 317 aa9.99□□□□□ -0.81
SCN1A-207ENST00000507401 KIF16BQ96L93 1317 aa9.99□□□□□ -0.81
SCN1A-207ENST00000507401 FAM155AB1AL88 458 aaPredicted RBP9.98□□□□□ -0.81
SCN1A-207ENST00000507401 EYA2O00167 538 aa9.98□□□□□ -0.81
SCN1A-207ENST00000507401 UBTFL1P0CB47 393 aaPredicted RBP9.98□□□□□ -0.81
SCN1A-207ENST00000507401 HSPA8P11142 646 aaKnown RBP9.98□□□□□ -0.81
SCN1A-207ENST00000507401 GYG1P46976 350 aa9.98□□□□□ -0.81
SCN1A-207ENST00000507401 RFX5P48382 616 aaPredicted RBP9.98□□□□□ -0.81
SCN1A-207ENST00000507401 ZNF157P51786 506 aaPredicted RBP9.98□□□□□ -0.81
SCN1A-207ENST00000507401 LBX1P52954 281 aa9.98□□□□□ -0.81
SCN1A-207ENST00000507401 LRRC24Q50LG9 513 aa9.98□□□□□ -0.81
SCN1A-207ENST00000507401 CAVIN4Q5BKX8 364 aa9.98□□□□□ -0.81
SCN1A-207ENST00000507401 METTL24Q5JXM2 366 aa9.98□□□□□ -0.81
SCN1A-207ENST00000507401 MRIQ9BWK5 157 aa9.98□□□□□ -0.81
SCN1A-207ENST00000507401 MYO1BO43795 1136 aa9.97□□□□□ -0.81
SCN1A-207ENST00000507401 CIAO1O76071 339 aa9.97□□□□□ -0.81
SCN1A-207ENST00000507401 FGFR2P21802 821 aa9.97□□□□□ -0.81
SCN1A-207ENST00000507401 NF2P35240 595 aa9.97□□□□□ -0.81
SCN1A-207ENST00000507401 PLCB2Q00722 1185 aa9.97□□□□□ -0.81
SCN1A-207ENST00000507401 PTPN12Q05209 780 aaKnown RBP9.97□□□□□ -0.81
SCN1A-207ENST00000507401 PROX2Q3B8N5 592 aa9.97□□□□□ -0.81
SCN1A-207ENST00000507401 VPS37DQ86XT2 251 aa9.97□□□□□ -0.81
SCN1A-207ENST00000507401 TBC1D22AQ8WUA7 517 aa9.97□□□□□ -0.81
SCN1A-207ENST00000507401 SERPINA10Q9UK55 444 aa9.97□□□□□ -0.81
SCN1A-207ENST00000507401 PPP2R3BQ9Y5P8 575 aa9.97□□□□□ -0.81
SCN1A-207ENST00000507401 UNCXA6NJT0 531 aa9.96□□□□□ -0.82
SCN1A-207ENST00000507401 GNAI3P08754 354 aa9.96□□□□□ -0.82
SCN1A-207ENST00000507401 SLC10A3P09131 477 aa9.96□□□□□ -0.82
SCN1A-207ENST00000507401 IFIT1P09914 478 aaKnown RBP9.96□□□□□ -0.82
SCN1A-207ENST00000507401 HDLBPQ00341 1268 aaKnown RBP9.96□□□□□ -0.82
SCN1A-207ENST00000507401 KIF23Q02241 960 aaPredicted RBP9.96□□□□□ -0.82
SCN1A-207ENST00000507401 PUM3Q15397 648 aaKnown RBP9.96□□□□□ -0.82
SCN1A-207ENST00000507401 CFAP100Q494V2 611 aa9.96□□□□□ -0.82
SCN1A-207ENST00000507401 MFSD14BQ5SR56 506 aa9.96□□□□□ -0.82
SCN1A-207ENST00000507401 KLHDC4Q8TBB5 520 aa9.96□□□□□ -0.82
SCN1A-207ENST00000507401 LPIN2Q92539 896 aa9.96□□□□□ -0.82
SCN1A-207ENST00000507401 PRMT6Q96LA8 375 aaPredicted RBP9.96□□□□□ -0.82
SCN1A-207ENST00000507401 DEFB129Q9H1M3 183 aa9.96□□□□□ -0.82
SCN1A-207ENST00000507401 COPRSQ9NQ92 184 aa9.96□□□□□ -0.82
SCN1A-207ENST00000507401 SUGT1Q9Y2Z0 365 aa9.96□□□□□ -0.82
SCN1A-207ENST00000507401 F8W031 263 aaPredicted RBP9.95□□□□□ -0.82
SCN1A-207ENST00000507401 IL15P40933 162 aaPredicted RBP9.95□□□□□ -0.82
SCN1A-207ENST00000507401 NBR1Q14596 966 aa9.95□□□□□ -0.82
SCN1A-207ENST00000507401 SUPT20HL1Q3ZLR7 823 aa9.95□□□□□ -0.82
SCN1A-207ENST00000507401 LDLRAD1Q5T700 205 aa9.95□□□□□ -0.82
SCN1A-207ENST00000507401 ATF7IPQ6VMQ6 1270 aa9.95□□□□□ -0.82
SCN1A-207ENST00000507401 ATG9AQ7Z3C6 839 aa9.95□□□□□ -0.82
SCN1A-207ENST00000507401 ZIC5Q96T25 663 aa9.95□□□□□ -0.82
SCN1A-207ENST00000507401 SAGE1Q9NXZ1 904 aa9.95□□□□□ -0.82
SCN1A-207ENST00000507401 CEP126Q9P2H0 1117 aa9.95□□□□□ -0.82
SCN1A-207ENST00000507401 TTF2Q9UNY4 1162 aaKnown RBP9.95□□□□□ -0.82
SCN1A-207ENST00000507401 COL1A1P02452 1464 aaPredicted RBP9.95□□□□□ -0.82
SCN1A-207ENST00000507401 PAPPA2Q9BXP8 1791 aa9.95□□□□□ -0.82
SCN1A-207ENST00000507401 UBE2Q2LH0YL09 131 aa9.94□□□□□ -0.82
SCN1A-207ENST00000507401 FRAT2O75474 233 aaPredicted RBP9.94□□□□□ -0.82
SCN1A-207ENST00000507401 SLC5A1P13866 664 aa9.94□□□□□ -0.82
SCN1A-207ENST00000507401 BCAMP50895 628 aa9.94□□□□□ -0.82
SCN1A-207ENST00000507401 RBM5P52756 815 aaKnown RBP eCLIP9.94□□□□□ -0.82
SCN1A-207ENST00000507401 HNRNPUQ00839 825 aaKnown RBP eCLIP9.94□□□□□ -0.82
SCN1A-207ENST00000507401 MTX1Q13505 466 aa9.94□□□□□ -0.82
SCN1A-207ENST00000507401 MAP3K11Q16584 847 aa9.94□□□□□ -0.82
SCN1A-207ENST00000507401 TSR1Q2NL82 804 aaKnown RBP9.94□□□□□ -0.82
SCN1A-207ENST00000507401 PRAMEF18Q5VWM3 479 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms