RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 USPL1Q5W0Q7 1092 aa7.88□□□□□ -1.15
SMC4-224ENST00000494612 TXNDC2Q86VQ3 553 aa7.88□□□□□ -1.15
SMC4-224ENST00000494612 LRRC4CQ9HCJ2 640 aa7.88□□□□□ -1.15
SMC4-224ENST00000494612 EGFL7Q9UHF1 273 aa7.88□□□□□ -1.15
SMC4-224ENST00000494612 ECEL1O95672 775 aa7.87□□□□□ -1.15
SMC4-224ENST00000494612 B3GALT4O96024 378 aa7.87□□□□□ -1.15
SMC4-224ENST00000494612 NFICP08651 508 aa7.87□□□□□ -1.15
SMC4-224ENST00000494612 SEZ6L2Q6UXD5 910 aa7.87□□□□□ -1.15
SMC4-224ENST00000494612 KSR1Q8IVT5 923 aa7.87□□□□□ -1.15
SMC4-224ENST00000494612 SEMA6CQ9H3T2 930 aa7.87□□□□□ -1.15
SMC4-224ENST00000494612 ACSS3Q9H6R3 686 aa7.87□□□□□ -1.15
SMC4-224ENST00000494612 FAM105AQ9NUU6 356 aa7.87□□□□□ -1.15
SMC4-224ENST00000494612 CYP27A1Q02318 531 aa7.86□□□□□ -1.15
SMC4-224ENST00000494612 PLCL1Q15111 1095 aa7.86□□□□□ -1.15
SMC4-224ENST00000494612 ZFYVE1Q9HBF4 777 aa7.86□□□□□ -1.15
SMC4-224ENST00000494612 SLC5A6Q9Y289 635 aa7.86□□□□□ -1.15
SMC4-224ENST00000494612 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.85□□□□□ -1.15
SMC4-224ENST00000494612 PATL2C9JE40 543 aaKnown RBP7.85□□□□□ -1.15
SMC4-224ENST00000494612 ITPKAP23677 461 aa7.85□□□□□ -1.15
SMC4-224ENST00000494612 MAP7Q14244 749 aa7.85□□□□□ -1.15
SMC4-224ENST00000494612 HP1BP3Q5SSJ5 553 aaPredicted RBP7.85□□□□□ -1.15
SMC4-224ENST00000494612 ZNF576Q9H609 170 aa7.85□□□□□ -1.15
SMC4-224ENST00000494612 C1GALT1Q9NS00 363 aa7.85□□□□□ -1.15
SMC4-224ENST00000494612 ZC3H7BQ9UGR2 993 aaKnown RBP7.85□□□□□ -1.15
SMC4-224ENST00000494612 SYNGAP1Q96PV0 1343 aa7.84□□□□□ -1.15
SMC4-224ENST00000494612 ARHGAP4P98171 946 aa7.84□□□□□ -1.15
SMC4-224ENST00000494612 AKAP4Q5JQC9 854 aa7.84□□□□□ -1.15
SMC4-224ENST00000494612 TMCO4Q5TGY1 634 aa7.84□□□□□ -1.15
SMC4-224ENST00000494612 DYMQ7RTS9 669 aa7.84□□□□□ -1.15
SMC4-224ENST00000494612 SLC38A3Q99624 504 aa7.84□□□□□ -1.15
SMC4-224ENST00000494612 BRPF3Q9ULD4 1205 aa7.84□□□□□ -1.15
SMC4-224ENST00000494612 GNEQ9Y223 722 aaKnown RBP7.84□□□□□ -1.15
SMC4-224ENST00000494612 DYNC1LI2O43237 492 aaPredicted RBP7.83□□□□□ -1.16
SMC4-224ENST00000494612 RAB6AP20340 208 aa7.83□□□□□ -1.16
SMC4-224ENST00000494612 ZNF792Q3KQV3 632 aa7.83□□□□□ -1.16
SMC4-224ENST00000494612 ZNF765Q7L2R6 523 aa7.83□□□□□ -1.16
SMC4-224ENST00000494612 STK11IPQ8N1F8 1099 aa7.83□□□□□ -1.16
SMC4-224ENST00000494612 RAD18Q9NS91 495 aa7.83□□□□□ -1.16
SMC4-224ENST00000494612 BIN2Q9UBW5 565 aaPredicted RBP7.83□□□□□ -1.16
SMC4-224ENST00000494612 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.83□□□□□ -1.16
SMC4-224ENST00000494612 AOC2O75106 756 aa7.82□□□□□ -1.16
SMC4-224ENST00000494612 NEFLP07196 543 aa7.82□□□□□ -1.16
SMC4-224ENST00000494612 ASPAP45381 313 aa7.82□□□□□ -1.16
SMC4-224ENST00000494612 PTPN12Q05209 780 aaKnown RBP7.82□□□□□ -1.16
SMC4-224ENST00000494612 CARMIL2Q6F5E8 1435 aa7.82□□□□□ -1.16
SMC4-224ENST00000494612 DDX54Q8TDD1 881 aaKnown RBP7.82□□□□□ -1.16
SMC4-224ENST00000494612 FAM129BQ96TA1 746 aa7.82□□□□□ -1.16
SMC4-224ENST00000494612 CORO1BQ9BR76 489 aa7.82□□□□□ -1.16
SMC4-224ENST00000494612 PPP1R9AQ9ULJ8 1098 aa7.82□□□□□ -1.16
SMC4-224ENST00000494612 IGHA2P01877 340 aa7.81□□□□□ -1.16
SMC4-224ENST00000494612 ORC1Q13415 861 aa7.81□□□□□ -1.16
SMC4-224ENST00000494612 KRTAP19-4Q3LI73 84 aa7.81□□□□□ -1.16
SMC4-224ENST00000494612 OGFOD3Q6PK18 319 aa7.81□□□□□ -1.16
SMC4-224ENST00000494612 BCL7CQ8WUZ0 217 aaPredicted RBP7.81□□□□□ -1.16
SMC4-224ENST00000494612 FAM168AQ92567 244 aa7.81□□□□□ -1.16
SMC4-224ENST00000494612 WDR18Q9BV38 432 aa7.81□□□□□ -1.16
SMC4-224ENST00000494612 KRTAP4-5Q9BYR2 181 aa7.81□□□□□ -1.16
SMC4-224ENST00000494612 EHD4Q9H223 541 aa7.81□□□□□ -1.16
SMC4-224ENST00000494612 SOWAHDA6NJG2 315 aa7.8□□□□□ -1.16
SMC4-224ENST00000494612 H3BRB1 525 aa7.8□□□□□ -1.16
SMC4-224ENST00000494612 CPNE3O75131 537 aaKnown RBP7.8□□□□□ -1.16
SMC4-224ENST00000494612 ATG4DQ86TL0 474 aaPredicted RBP7.8□□□□□ -1.16
SMC4-224ENST00000494612 TUT1Q9H6E5 874 aaKnown RBP7.8□□□□□ -1.16
SMC4-224ENST00000494612 ABCB6Q9NP58 842 aa7.8□□□□□ -1.16
SMC4-224ENST00000494612 AP4E1Q9UPM8 1137 aa7.8□□□□□ -1.16
SMC4-224ENST00000494612 MFAP1P55081 439 aaKnown RBP7.79□□□□□ -1.16
SMC4-224ENST00000494612 AP3B2Q13367 1082 aa7.79□□□□□ -1.16
SMC4-224ENST00000494612 PDE3BQ13370 1112 aa7.79□□□□□ -1.16
SMC4-224ENST00000494612 RPS26P11Q5JNZ5 115 aaPredicted RBP7.79□□□□□ -1.16
SMC4-224ENST00000494612 PRPF40BQ6NWY9 871 aaKnown RBP7.79□□□□□ -1.16
SMC4-224ENST00000494612 SND1Q7KZF4 910 aaKnown RBP eCLIP7.79□□□□□ -1.16
SMC4-224ENST00000494612 WFDC3Q8IUB2 231 aa7.79□□□□□ -1.16
SMC4-224ENST00000494612 TMEM40Q8WWA1 233 aa7.79□□□□□ -1.16
SMC4-224ENST00000494612 CITED4Q96RK1 184 aa7.79□□□□□ -1.16
SMC4-224ENST00000494612 NPHS2Q9NP85 383 aa7.79□□□□□ -1.16
SMC4-224ENST00000494612 CCDC9Q9Y3X0 531 aaKnown RBP7.79□□□□□ -1.16
SMC4-224ENST00000494612 ZNF574Q6ZN55 896 aaPredicted RBP7.78□□□□□ -1.16
SMC4-224ENST00000494612 GLYCTKQ8IVS8 523 aa7.78□□□□□ -1.16
SMC4-224ENST00000494612 CCDC74AQ96AQ1 378 aa7.78□□□□□ -1.16
SMC4-224ENST00000494612 TMEM238LA0A1B0GVL6 79 aa7.77□□□□□ -1.17
SMC4-224ENST00000494612 NDUFB5O43674 189 aa7.77□□□□□ -1.17
SMC4-224ENST00000494612 FAAP100Q0VG06 881 aa7.77□□□□□ -1.17
SMC4-224ENST00000494612 GLIS3Q8NEA6 775 aa7.77□□□□□ -1.17
SMC4-224ENST00000494612 MISP3Q96FF7 219 aa7.77□□□□□ -1.17
SMC4-224ENST00000494612 WDR89Q96FK6 387 aaPredicted RBP7.77□□□□□ -1.17
SMC4-224ENST00000494612 DNAJC25Q9H1X3 360 aa7.77□□□□□ -1.17
SMC4-224ENST00000494612 CRIM1Q9NZV1 1036 aa7.77□□□□□ -1.17
SMC4-224ENST00000494612 DAGLAQ9Y4D2 1042 aa7.77□□□□□ -1.17
SMC4-224ENST00000494612 EIF1AYO14602 144 aaKnown RBP7.76□□□□□ -1.17
SMC4-224ENST00000494612 TMPRSS2O15393 492 aa7.76□□□□□ -1.17
SMC4-224ENST00000494612 PDE3AQ14432 1141 aa7.76□□□□□ -1.17
SMC4-224ENST00000494612 CCDC27Q2M243 656 aa7.76□□□□□ -1.17
SMC4-224ENST00000494612 SPRED2Q7Z698 418 aa7.76□□□□□ -1.17
SMC4-224ENST00000494612 CCDC86Q9H6F5 360 aaKnown RBP7.76□□□□□ -1.17
SMC4-224ENST00000494612 RC3H2Q9HBD1 1191 aaKnown RBP7.76□□□□□ -1.17
SMC4-224ENST00000494612 LGR6Q9HBX8 967 aa7.76□□□□□ -1.17
SMC4-224ENST00000494612 LIG1P18858 919 aa7.75□□□□□ -1.17
SMC4-224ENST00000494612 PCDHGC5Q9Y5F6 944 aa7.75□□□□□ -1.17
SMC4-224ENST00000494612 KRTAP9-7A8MTY7 169 aa7.74□□□□□ -1.17
SMC4-224ENST00000494612 GPR182O15218 404 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms