RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 PRICKLE2Q7Z3G6 844 aa7.37□□□□□ -1.23
PTPN4-210ENST00000485247 CNBD1Q8NA66 436 aa7.37□□□□□ -1.23
PTPN4-210ENST00000485247 C7orf43Q8WVR3 580 aa7.37□□□□□ -1.23
PTPN4-210ENST00000485247 NANOS1Q8WY41 292 aaKnown RBP7.37□□□□□ -1.23
PTPN4-210ENST00000485247 HHIPL1Q96JK4 782 aa7.37□□□□□ -1.23
PTPN4-210ENST00000485247 ZNF408Q9H9D4 720 aa7.37□□□□□ -1.23
PTPN4-210ENST00000485247 CACNA1SQ13698 1873 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 DLL1O00548 723 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 IL2RAP01589 272 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 GPC1P35052 558 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 SCNN1DP51172 638 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 EIF6P56537 245 aaKnown RBP7.36□□□□□ -1.23
PTPN4-210ENST00000485247 ST5P78524 1137 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 SLC39A6Q13433 755 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 SLFNL1Q499Z3 407 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 RNF135Q8IUD6 432 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 SYNE4Q8N205 404 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 TESK2Q96S53 571 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 CUEDC1Q9NWM3 386 aaPredicted RBP7.36□□□□□ -1.23
PTPN4-210ENST00000485247 STK17AQ9UEE5 414 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 DOLKQ9UPQ8 538 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 TRPM7Q96QT4 1865 aa7.36□□□□□ -1.23
PTPN4-210ENST00000485247 TRPA1O75762 1119 aa7.35□□□□□ -1.23
PTPN4-210ENST00000485247 STAU1O95793 577 aaKnown RBP7.35□□□□□ -1.23
PTPN4-210ENST00000485247 FXR1P51114 621 aaKnown RBP eCLIP7.35□□□□□ -1.23
PTPN4-210ENST00000485247 NOGQ13253 232 aa7.35□□□□□ -1.23
PTPN4-210ENST00000485247 AMOTQ4VCS5 1084 aa7.35□□□□□ -1.23
PTPN4-210ENST00000485247 USP50Q70EL3 339 aaPredicted RBP7.35□□□□□ -1.23
PTPN4-210ENST00000485247 CTU1Q7Z7A3 348 aaKnown RBP7.35□□□□□ -1.23
PTPN4-210ENST00000485247 RTKN2Q8IZC4 609 aa7.35□□□□□ -1.23
PTPN4-210ENST00000485247 ZSCAN1Q8NBB4 408 aa7.35□□□□□ -1.23
PTPN4-210ENST00000485247 JDP2Q8WYK2 163 aa7.35□□□□□ -1.23
PTPN4-210ENST00000485247 SETDB2Q96T68 719 aa7.35□□□□□ -1.23
PTPN4-210ENST00000485247 GRIP2Q9C0E4 1043 aa7.35□□□□□ -1.23
PTPN4-210ENST00000485247 POLKQ9UBT6 870 aa7.35□□□□□ -1.23
PTPN4-210ENST00000485247 HRH3Q9Y5N1 445 aa7.35□□□□□ -1.23
PTPN4-210ENST00000485247 KIF20BQ96Q89 1820 aa7.34□□□□□ -1.23
PTPN4-210ENST00000485247 A0A087WZG4 1122 aa7.34□□□□□ -1.23
PTPN4-210ENST00000485247 EIF5P55010 431 aaKnown RBP7.34□□□□□ -1.23
PTPN4-210ENST00000485247 OXLD1Q5BKU9 147 aa7.34□□□□□ -1.23
PTPN4-210ENST00000485247 AKAP4Q5JQC9 854 aa7.34□□□□□ -1.23
PTPN4-210ENST00000485247 NLRP3Q96P20 1036 aa7.34□□□□□ -1.23
PTPN4-210ENST00000485247 GLIS2Q9BZE0 524 aaPredicted RBP7.34□□□□□ -1.23
PTPN4-210ENST00000485247 SAGE1Q9NXZ1 904 aa7.34□□□□□ -1.23
PTPN4-210ENST00000485247 ANKRD26Q9UPS8 1709 aa7.33□□□□□ -1.24
PTPN4-210ENST00000485247 PIK3CDO00329 1044 aa7.33□□□□□ -1.24
PTPN4-210ENST00000485247 MYCP01106 439 aaPredicted RBP7.33□□□□□ -1.24
PTPN4-210ENST00000485247 GNRH1P01148 92 aa7.33□□□□□ -1.24
PTPN4-210ENST00000485247 NPR1P16066 1061 aa7.33□□□□□ -1.24
PTPN4-210ENST00000485247 TNNT2P45379 298 aaPredicted RBP7.33□□□□□ -1.24
PTPN4-210ENST00000485247 HUNKP57058 714 aa7.33□□□□□ -1.24
PTPN4-210ENST00000485247 TMEM132AQ24JP5 1023 aa7.33□□□□□ -1.24
PTPN4-210ENST00000485247 RNFT1Q5M7Z0 435 aa7.33□□□□□ -1.24
PTPN4-210ENST00000485247 VWA5B2Q8N398 1253 aa7.33□□□□□ -1.24
PTPN4-210ENST00000485247 RNF186Q9NXI6 227 aa7.33□□□□□ -1.24
PTPN4-210ENST00000485247 ARFGEF2Q9Y6D5 1785 aa7.33□□□□□ -1.24
PTPN4-210ENST00000485247 CDC14CA4D256 554 aa7.32□□□□□ -1.24
PTPN4-210ENST00000485247 SOX11P35716 441 aa7.32□□□□□ -1.24
PTPN4-210ENST00000485247 KIF23Q02241 960 aaPredicted RBP7.32□□□□□ -1.24
PTPN4-210ENST00000485247 POU4F2Q12837 409 aa7.32□□□□□ -1.24
PTPN4-210ENST00000485247 SEMA3FQ13275 785 aa7.32□□□□□ -1.24
PTPN4-210ENST00000485247 AEBP1Q8IUX7 1158 aa7.32□□□□□ -1.24
PTPN4-210ENST00000485247 PLPP7Q8NBV4 271 aa7.32□□□□□ -1.24
PTPN4-210ENST00000485247 ESYT1Q9BSJ8 1104 aa7.32□□□□□ -1.24
PTPN4-210ENST00000485247 COL25A1Q9BXS0 654 aaPredicted RBP7.32□□□□□ -1.24
PTPN4-210ENST00000485247 ALG2Q9H553 416 aa7.32□□□□□ -1.24
PTPN4-210ENST00000485247 SLC52A2Q9HAB3 445 aa7.32□□□□□ -1.24
PTPN4-210ENST00000485247 LGR6Q9HBX8 967 aa7.32□□□□□ -1.24
PTPN4-210ENST00000485247 ADARB2Q9NS39 739 aaKnown RBP7.32□□□□□ -1.24
PTPN4-210ENST00000485247 POM121CA8CG34 1229 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 SPATA31C2B4DYI2 1134 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 STARD3NLO95772 234 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 CENPCQ03188 943 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 FLIIQ13045 1269 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 USP4Q13107 963 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 RGMBQ6NW40 437 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 NBPF10Q6P3W6 841 aaKnown RBP7.31□□□□□ -1.24
PTPN4-210ENST00000485247 DLK2Q6UY11 383 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 NPM2Q86SE8 214 aaKnown RBP7.31□□□□□ -1.24
PTPN4-210ENST00000485247 NBPF5PQ86XG9 351 aaPredicted RBP7.31□□□□□ -1.24
PTPN4-210ENST00000485247 LARGE2Q8N3Y3 721 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 CNTNAP3BQ96NU0 1288 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 CNTNAP3Q9BZ76 1288 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 ETNK1Q9HBU6 452 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 GPRC5DQ9NZD1 345 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 COL4A5P29400 1685 aa7.31□□□□□ -1.24
PTPN4-210ENST00000485247 FAM155AB1AL88 458 aaPredicted RBP7.3□□□□□ -1.24
PTPN4-210ENST00000485247 CAMTA2O94983 1202 aa7.3□□□□□ -1.24
PTPN4-210ENST00000485247 ALDH1B1P30837 517 aa7.3□□□□□ -1.24
PTPN4-210ENST00000485247 PKN2Q16513 984 aaKnown RBP7.3□□□□□ -1.24
PTPN4-210ENST00000485247 SV2AQ7L0J3 742 aa7.3□□□□□ -1.24
PTPN4-210ENST00000485247 CDC37L1Q7L3B6 337 aa7.3□□□□□ -1.24
PTPN4-210ENST00000485247 SLC17A8Q8NDX2 589 aa7.3□□□□□ -1.24
PTPN4-210ENST00000485247 ADAMTS19Q8TE59 1207 aa7.3□□□□□ -1.24
PTPN4-210ENST00000485247 ZNF837Q96EG3 531 aaPredicted RBP7.3□□□□□ -1.24
PTPN4-210ENST00000485247 XAGE2Q96GT9 111 aa7.3□□□□□ -1.24
PTPN4-210ENST00000485247 PSMD1Q99460 953 aa7.3□□□□□ -1.24
PTPN4-210ENST00000485247 HDAC9Q9UKV0 1011 aa7.3□□□□□ -1.24
PTPN4-210ENST00000485247 SCN7AQ01118 1682 aa7.29□□□□□ -1.24
PTPN4-210ENST00000485247 BCORQ6W2J9 1755 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms