RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ZNF622Q969S3 477 aaKnown RBP eCLIP15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 RTN1Q16799 776 aa15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 V9GY48 417 aaPredicted RBP15.95■□□□□ 0.14
CCDC88A-211ENST00000471947 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 CSF1RP07333 972 aa15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 LMOD1P29536 600 aaPredicted RBP15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 AFMP43652 599 aa15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 NR5A1Q13285 461 aa15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 KRT40Q6A162 431 aa15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 MAPKAPK5Q8IW41 473 aa15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 VSIG10Q8N0Z9 540 aa15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 OLFM4Q6UX06 510 aa15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 STRBPQ96SI9 672 aaKnown RBP15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 SPTLC2O15270 562 aa15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 CDK11BP21127 795 aaKnown RBP15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 HIBADHP31937 336 aaKnown RBP15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 ANTXR2P58335 489 aa15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 ARHGEF1Q92888 912 aaKnown RBP15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 CBX8Q9HC52 389 aa15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 CABP5Q9NP86 173 aa15.94■□□□□ 0.14
CCDC88A-211ENST00000471947 GUCY1A2P33402 732 aa15.93■□□□□ 0.14
CCDC88A-211ENST00000471947 CNBD1Q8NA66 436 aa15.93■□□□□ 0.14
CCDC88A-211ENST00000471947 C16orf45Q96MC5 204 aaPredicted RBP15.93■□□□□ 0.14
CCDC88A-211ENST00000471947 DYNLL2Q96FJ2 89 aa15.93■□□□□ 0.14
CCDC88A-211ENST00000471947 GOLGA8HP0CJ92 632 aa15.93■□□□□ 0.14
CCDC88A-211ENST00000471947 ZNF827Q17R98 1081 aa15.93■□□□□ 0.14
CCDC88A-211ENST00000471947 PARP10Q53GL7 1025 aa15.93■□□□□ 0.14
CCDC88A-211ENST00000471947 IFIT1BQ5T764 474 aaKnown RBP15.93■□□□□ 0.14
CCDC88A-211ENST00000471947 ZNF34Q8IZ26 560 aa15.93■□□□□ 0.14
CCDC88A-211ENST00000471947 APOA5Q6Q788 366 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 ADGRA1Q86SQ6 560 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 ZSCAN29Q8IWY8 852 aaPredicted RBP15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 MROH5Q6ZUA9 1318 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 UFL1O94874 794 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 RESTQ13127 1097 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 AMIGO3Q86WK7 504 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 SLC44A5Q8NCS7 719 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 GPR108Q9NPR9 543 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 PCDHA7Q9UN72 937 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 KIF28PB7ZC32 967 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 NFIXQ14938 502 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 EPB41L4AQ9HCS5 686 aaPredicted RBP15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 MINPP1Q9UNW1 487 aa15.92■□□□□ 0.14
CCDC88A-211ENST00000471947 NDUFA8P51970 172 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 AKNAD1Q5T1N1 836 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 IQCA1Q86XH1 822 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 TGFBRAP1Q8WUH2 860 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 EEF2KMTQ96G04 330 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 UTRNP46939 3433 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 CARMIL3Q8ND23 1372 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 PATL2C9JE40 543 aaKnown RBP15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 MPHOSPH10O00566 681 aaKnown RBP15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 USP17L8P0C7I0 530 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 CLCN1P35523 988 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 GPIHBP1Q8IV16 184 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 GOLPH3LQ9H4A5 285 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 ZSCAN16Q9H4T2 348 aaPredicted RBP15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 SLIT3O75094 1523 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 SLC3A2P08195 630 aaKnown RBP15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 FDPSP14324 419 aaKnown RBP15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 DOK7Q18PE1 504 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 GRAMD1CQ8IYS0 662 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 CLIP2Q9UDT6 1046 aa15.91■□□□□ 0.14
CCDC88A-211ENST00000471947 GOLGA6L6A8MZA4 724 aa15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 LETM1O95202 739 aaPredicted RBP15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 CDC25AP30304 524 aa15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 STX17P56962 302 aa15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 PPARAQ07869 468 aa15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 TRIM28Q13263 835 aaKnown RBP15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 ARID5BQ14865 1188 aa15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 ZNF174Q15697 407 aa15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 C11orf57Q6ZUT1 292 aaPredicted RBP15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 DIS3L2Q8IYB7 885 aaKnown RBP15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 SEPT12Q8IYM1 358 aa15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 MRPS27Q92552 414 aaKnown RBP15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 TMX4Q9H1E5 349 aaPredicted RBP15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 DDX19AQ9NUU7 478 aaKnown RBP15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 TCHHQ07283 1943 aa15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 SCNN1DP51172 638 aa15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 FAM200AQ8TCP9 573 aa15.9■□□□□ 0.14
CCDC88A-211ENST00000471947 MYSM1Q5VVJ2 828 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 TRMT1LQ7Z2T5 733 aaKnown RBP15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 RASGRP4Q8TDF6 673 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 GSG1L2A8MUP6 293 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 ERVV-1B6SEH8 477 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 NTSR2O95665 410 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 SERPINC1P01008 464 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 CASP1P29466 404 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 CNNM3Q8NE01 707 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 QTRT2Q9H974 415 aaKnown RBP15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 MAPK8IP1Q9UQF2 711 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 TNKSO95271 1327 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 FAM208AQ9UK61 1670 aaKnown RBP15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 UQCRHLA0A096LP55 91 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 FAM205CA6NFA0 338 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 CDKL5O76039 1030 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 UQCRHP07919 91 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 EXOSC10Q01780 885 aaKnown RBP15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 ESR2Q92731 530 aa15.89■□□□□ 0.13
CCDC88A-211ENST00000471947 ADAMTSL3P82987 1691 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 609 ms