RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 DYNC1LI2O43237 492 aaPredicted RBP7.85□□□□□ -1.15
CCDC88A-210ENST00000468534 LIG1P18858 919 aa7.85□□□□□ -1.15
CCDC88A-210ENST00000468534 AP3B2Q13367 1082 aa7.85□□□□□ -1.15
CCDC88A-210ENST00000468534 DUSP27Q5VZP5 1158 aa7.85□□□□□ -1.15
CCDC88A-210ENST00000468534 TP53INP2Q8IXH6 220 aa7.85□□□□□ -1.15
CCDC88A-210ENST00000468534 CSRNP1Q96S65 589 aa7.85□□□□□ -1.15
CCDC88A-210ENST00000468534 GOLGA2P5Q9HBQ8 144 aa7.85□□□□□ -1.15
CCDC88A-210ENST00000468534 ADGRE2Q9UHX3 823 aa7.85□□□□□ -1.15
CCDC88A-210ENST00000468534 RNF114Q9Y508 228 aa7.85□□□□□ -1.15
CCDC88A-210ENST00000468534 FAAP100Q0VG06 881 aa7.84□□□□□ -1.15
CCDC88A-210ENST00000468534 GRM2Q14416 872 aa7.84□□□□□ -1.15
CCDC88A-210ENST00000468534 VSIG10LQ86VR7 867 aa7.84□□□□□ -1.15
CCDC88A-210ENST00000468534 CCER1Q8TC90 406 aaPredicted RBP7.84□□□□□ -1.15
CCDC88A-210ENST00000468534 DNAJC25Q9H1X3 360 aa7.84□□□□□ -1.15
CCDC88A-210ENST00000468534 PPP1R9AQ9ULJ8 1098 aa7.84□□□□□ -1.15
CCDC88A-210ENST00000468534 IGHA2P01877 340 aa7.83□□□□□ -1.16
CCDC88A-210ENST00000468534 PRPF40BQ6NWY9 871 aaKnown RBP7.83□□□□□ -1.16
CCDC88A-210ENST00000468534 PI16Q6UXB8 463 aa7.83□□□□□ -1.16
CCDC88A-210ENST00000468534 DTHD1Q6ZMT9 781 aa7.83□□□□□ -1.16
CCDC88A-210ENST00000468534 KRTAP19-1Q8IUB9 90 aa7.83□□□□□ -1.16
CCDC88A-210ENST00000468534 WDR89Q96FK6 387 aaPredicted RBP7.83□□□□□ -1.16
CCDC88A-210ENST00000468534 CCDC86Q9H6F5 360 aaKnown RBP7.83□□□□□ -1.16
CCDC88A-210ENST00000468534 BIN2Q9UBW5 565 aaPredicted RBP7.83□□□□□ -1.16
CCDC88A-210ENST00000468534 GPN3Q9UHW5 284 aaPredicted RBP7.83□□□□□ -1.16
CCDC88A-210ENST00000468534 TRAK1Q9UPV9 953 aa7.83□□□□□ -1.16
CCDC88A-210ENST00000468534 TXKP42681 527 aa7.82□□□□□ -1.16
CCDC88A-210ENST00000468534 FCGRTP55899 365 aa7.82□□□□□ -1.16
CCDC88A-210ENST00000468534 PTPN12Q05209 780 aaKnown RBP7.82□□□□□ -1.16
CCDC88A-210ENST00000468534 TRIM26Q12899 539 aaPredicted RBP7.82□□□□□ -1.16
CCDC88A-210ENST00000468534 FLCNQ8NFG4 579 aa7.82□□□□□ -1.16
CCDC88A-210ENST00000468534 DMRTB1Q96MA1 342 aa7.82□□□□□ -1.16
CCDC88A-210ENST00000468534 C1GALT1Q9NS00 363 aa7.82□□□□□ -1.16
CCDC88A-210ENST00000468534 BSDC1Q9NW68 430 aaPredicted RBP7.82□□□□□ -1.16
CCDC88A-210ENST00000468534 ZC3H7BQ9UGR2 993 aaKnown RBP7.82□□□□□ -1.16
CCDC88A-210ENST00000468534 TMPRSS2O15393 492 aa7.81□□□□□ -1.16
CCDC88A-210ENST00000468534 PRNPP04156 253 aa7.81□□□□□ -1.16
CCDC88A-210ENST00000468534 CYP27A1Q02318 531 aa7.81□□□□□ -1.16
CCDC88A-210ENST00000468534 NFXL1Q6ZNB6 911 aa7.81□□□□□ -1.16
CCDC88A-210ENST00000468534 GLIS3Q8NEA6 775 aa7.81□□□□□ -1.16
CCDC88A-210ENST00000468534 FMNL2Q96PY5 1086 aa7.81□□□□□ -1.16
CCDC88A-210ENST00000468534 GSX1Q9H4S2 264 aaPredicted RBP7.81□□□□□ -1.16
CCDC88A-210ENST00000468534 PIDD1Q9HB75 910 aa7.81□□□□□ -1.16
CCDC88A-210ENST00000468534 SOWAHDA6NJG2 315 aa7.8□□□□□ -1.16
CCDC88A-210ENST00000468534 CDK5R2Q13319 367 aa7.8□□□□□ -1.16
CCDC88A-210ENST00000468534 RPS26P11Q5JNZ5 115 aaPredicted RBP7.8□□□□□ -1.16
CCDC88A-210ENST00000468534 FBXL18Q96ME1 805 aa7.8□□□□□ -1.16
CCDC88A-210ENST00000468534 RBCK1Q9BYM8 510 aa7.8□□□□□ -1.16
CCDC88A-210ENST00000468534 NLRP2Q9NX02 1062 aa7.8□□□□□ -1.16
CCDC88A-210ENST00000468534 ZNF862O60290 1169 aa7.79□□□□□ -1.16
CCDC88A-210ENST00000468534 GSTP1P09211 210 aaKnown RBP7.79□□□□□ -1.16
CCDC88A-210ENST00000468534 ID3Q02535 119 aa7.79□□□□□ -1.16
CCDC88A-210ENST00000468534 SEZ6L2Q6UXD5 910 aa7.79□□□□□ -1.16
CCDC88A-210ENST00000468534 TMC7Q7Z402 723 aa7.79□□□□□ -1.16
CCDC88A-210ENST00000468534 ALKBH8Q96BT7 664 aaKnown RBP7.79□□□□□ -1.16
CCDC88A-210ENST00000468534 RNGTTO60942 597 aaKnown RBP7.78□□□□□ -1.16
CCDC88A-210ENST00000468534 SLFN14P0C7P3 912 aa7.78□□□□□ -1.16
CCDC88A-210ENST00000468534 KCNB2Q92953 911 aa7.78□□□□□ -1.16
CCDC88A-210ENST00000468534 FANCD2OSQ96PS1 177 aa7.78□□□□□ -1.16
CCDC88A-210ENST00000468534 CRIM1Q9NZV1 1036 aa7.78□□□□□ -1.16
CCDC88A-210ENST00000468534 FAM87AP0C7U9 286 aa7.77□□□□□ -1.17
CCDC88A-210ENST00000468534 PPP2R3AQ06190 1150 aa7.77□□□□□ -1.17
CCDC88A-210ENST00000468534 PDE4CQ08493 712 aa7.77□□□□□ -1.17
CCDC88A-210ENST00000468534 OGFOD3Q6PK18 319 aa7.77□□□□□ -1.17
CCDC88A-210ENST00000468534 BCO2Q9BYV7 579 aa7.77□□□□□ -1.17
CCDC88A-210ENST00000468534 ATXN3LQ9H3M9 355 aa7.77□□□□□ -1.17
CCDC88A-210ENST00000468534 TMEM39AQ9NV64 488 aa7.77□□□□□ -1.17
CCDC88A-210ENST00000468534 PPP4R2Q9NY27 417 aa7.77□□□□□ -1.17
CCDC88A-210ENST00000468534 AKAP2Q9Y2D5 859 aa7.77□□□□□ -1.17
CCDC88A-210ENST00000468534 HCLS1P14317 486 aaPredicted RBP7.76□□□□□ -1.17
CCDC88A-210ENST00000468534 MAPK1P28482 360 aa7.76□□□□□ -1.17
CCDC88A-210ENST00000468534 TTLL4Q14679 1199 aa7.76□□□□□ -1.17
CCDC88A-210ENST00000468534 ZNF574Q6ZN55 896 aaPredicted RBP7.76□□□□□ -1.17
CCDC88A-210ENST00000468534 SMYD4Q8IYR2 804 aaPredicted RBP7.76□□□□□ -1.17
CCDC88A-210ENST00000468534 PAK6Q9NQU5 681 aaPredicted RBP7.76□□□□□ -1.17
CCDC88A-210ENST00000468534 PNMA6FA0A0J9YX94 578 aa7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 COL19A1Q14993 1142 aa7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 KIF4BQ2VIQ3 1234 aa7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 CYP27C1Q4G0S4 372 aa7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 NXPE4Q6UWF7 544 aa7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 SULF2Q8IWU5 870 aa7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 FAM181AQ8N9Y4 354 aa7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 STK35Q8TDR2 534 aa7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 DISC1Q9NRI5 854 aa7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 DCTN4Q9UJW0 460 aa7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 SYNGAP1Q96PV0 1343 aa7.75□□□□□ -1.17
CCDC88A-210ENST00000468534 HNRNPUQ00839 825 aaKnown RBP eCLIP7.74□□□□□ -1.17
CCDC88A-210ENST00000468534 MAP1SQ66K74 1059 aaPredicted RBP7.74□□□□□ -1.17
CCDC88A-210ENST00000468534 AGBL5Q8NDL9 886 aa7.74□□□□□ -1.17
CCDC88A-210ENST00000468534 KRT82Q9NSB4 513 aa7.74□□□□□ -1.17
CCDC88A-210ENST00000468534 SLC5A6Q9Y289 635 aa7.74□□□□□ -1.17
CCDC88A-210ENST00000468534 PCDHGC5Q9Y5F6 944 aa7.74□□□□□ -1.17
CCDC88A-210ENST00000468534 CBLL1Q75N03 491 aa7.73□□□□□ -1.17
CCDC88A-210ENST00000468534 PDZD3Q86UT5 571 aa7.73□□□□□ -1.17
CCDC88A-210ENST00000468534 PLD6Q8N2A8 252 aaKnown RBP7.73□□□□□ -1.17
CCDC88A-210ENST00000468534 BCL7CQ8WUZ0 217 aaPredicted RBP7.73□□□□□ -1.17
CCDC88A-210ENST00000468534 CBX8Q9HC52 389 aa7.73□□□□□ -1.17
CCDC88A-210ENST00000468534 SSU72Q9NP77 194 aaKnown RBP7.73□□□□□ -1.17
CCDC88A-210ENST00000468534 LEFTY1O75610 366 aa7.72□□□□□ -1.17
CCDC88A-210ENST00000468534 PLCB3Q01970 1234 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms