RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ZC3H7BQ9UGR2 993 aaKnown RBP7.31□□□□□ -1.24
VPS29-202ENST00000447578 ZNF157P51786 506 aaPredicted RBP7.3□□□□□ -1.24
VPS29-202ENST00000447578 MAP7Q14244 749 aa7.3□□□□□ -1.24
VPS29-202ENST00000447578 DUSP27Q5VZP5 1158 aa7.3□□□□□ -1.24
VPS29-202ENST00000447578 VSIG10LQ86VR7 867 aa7.3□□□□□ -1.24
VPS29-202ENST00000447578 BSDC1Q9NW68 430 aaPredicted RBP7.3□□□□□ -1.24
VPS29-202ENST00000447578 PPP1R9AQ9ULJ8 1098 aa7.3□□□□□ -1.24
VPS29-202ENST00000447578 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.29□□□□□ -1.24
VPS29-202ENST00000447578 AOC2O75106 756 aa7.29□□□□□ -1.24
VPS29-202ENST00000447578 CPNE3O75131 537 aaKnown RBP7.29□□□□□ -1.24
VPS29-202ENST00000447578 PDIA4P13667 645 aaKnown RBP7.29□□□□□ -1.24
VPS29-202ENST00000447578 ITPKAP23677 461 aa7.29□□□□□ -1.24
VPS29-202ENST00000447578 PDE3AQ14432 1141 aa7.29□□□□□ -1.24
VPS29-202ENST00000447578 ASIC4Q96FT7 647 aa7.29□□□□□ -1.24
VPS29-202ENST00000447578 WDR18Q9BV38 432 aa7.29□□□□□ -1.24
VPS29-202ENST00000447578 C1GALT1Q9NS00 363 aa7.29□□□□□ -1.24
VPS29-202ENST00000447578 DAGLAQ9Y4D2 1042 aa7.29□□□□□ -1.24
VPS29-202ENST00000447578 NDUFB5O43674 189 aa7.28□□□□□ -1.24
VPS29-202ENST00000447578 NEFLP07196 543 aa7.28□□□□□ -1.24
VPS29-202ENST00000447578 LIG1P18858 919 aa7.28□□□□□ -1.24
VPS29-202ENST00000447578 HP1BP3Q5SSJ5 553 aaPredicted RBP7.28□□□□□ -1.24
VPS29-202ENST00000447578 SEZ6L2Q6UXD5 910 aa7.28□□□□□ -1.24
VPS29-202ENST00000447578 CBLL1Q75N03 491 aa7.28□□□□□ -1.24
VPS29-202ENST00000447578 FLCNQ8NFG4 579 aa7.28□□□□□ -1.24
VPS29-202ENST00000447578 WDR89Q96FK6 387 aaPredicted RBP7.28□□□□□ -1.24
VPS29-202ENST00000447578 FBXL18Q96ME1 805 aa7.28□□□□□ -1.24
VPS29-202ENST00000447578 FAM129BQ96TA1 746 aa7.28□□□□□ -1.24
VPS29-202ENST00000447578 ZC3H12CQ9C0D7 883 aaKnown RBP7.28□□□□□ -1.24
VPS29-202ENST00000447578 GSX1Q9H4S2 264 aaPredicted RBP7.28□□□□□ -1.24
VPS29-202ENST00000447578 ABCB6Q9NP58 842 aa7.28□□□□□ -1.24
VPS29-202ENST00000447578 KRTAP9-7A8MTY7 169 aa7.27□□□□□ -1.25
VPS29-202ENST00000447578 SPOCD1Q6ZMY3 1216 aa7.27□□□□□ -1.25
VPS29-202ENST00000447578 DDX54Q8TDD1 881 aaKnown RBP7.27□□□□□ -1.25
VPS29-202ENST00000447578 CCDC74AQ96AQ1 378 aa7.27□□□□□ -1.25
VPS29-202ENST00000447578 KRTAP9-8Q9BYQ0 159 aa7.27□□□□□ -1.25
VPS29-202ENST00000447578 NIF3L1Q9GZT8 377 aa7.27□□□□□ -1.25
VPS29-202ENST00000447578 ZFYVE1Q9HBF4 777 aa7.27□□□□□ -1.25
VPS29-202ENST00000447578 PAK6Q9NQU5 681 aaPredicted RBP7.27□□□□□ -1.25
VPS29-202ENST00000447578 USTQ9Y2C2 406 aa7.27□□□□□ -1.25
VPS29-202ENST00000447578 EIF1AYO14602 144 aaKnown RBP7.26□□□□□ -1.25
VPS29-202ENST00000447578 GPR182O15218 404 aa7.26□□□□□ -1.25
VPS29-202ENST00000447578 IGHA2P01877 340 aa7.26□□□□□ -1.25
VPS29-202ENST00000447578 FAAP100Q0VG06 881 aa7.26□□□□□ -1.25
VPS29-202ENST00000447578 PDE3BQ13370 1112 aa7.26□□□□□ -1.25
VPS29-202ENST00000447578 TMC1Q8TDI8 760 aa7.26□□□□□ -1.25
VPS29-202ENST00000447578 CCDC86Q9H6F5 360 aaKnown RBP7.26□□□□□ -1.25
VPS29-202ENST00000447578 TMEM238LA0A1B0GVL6 79 aa7.25□□□□□ -1.25
VPS29-202ENST00000447578 GADD45BO75293 160 aaPredicted RBP7.25□□□□□ -1.25
VPS29-202ENST00000447578 CYP27A1Q02318 531 aa7.25□□□□□ -1.25
VPS29-202ENST00000447578 B4GALNT3Q6L9W6 998 aa7.25□□□□□ -1.25
VPS29-202ENST00000447578 TMPRSS2O15393 492 aa7.24□□□□□ -1.25
VPS29-202ENST00000447578 RANGAP1P46060 587 aaPredicted RBP7.24□□□□□ -1.25
VPS29-202ENST00000447578 AP3B2Q13367 1082 aa7.24□□□□□ -1.25
VPS29-202ENST00000447578 GRM2Q14416 872 aa7.24□□□□□ -1.25
VPS29-202ENST00000447578 OGFOD3Q6PK18 319 aa7.24□□□□□ -1.25
VPS29-202ENST00000447578 ZNF574Q6ZN55 896 aaPredicted RBP7.24□□□□□ -1.25
VPS29-202ENST00000447578 GLIS3Q8NEA6 775 aa7.24□□□□□ -1.25
VPS29-202ENST00000447578 EPS8L3Q8TE67 593 aaKnown RBP7.24□□□□□ -1.25
VPS29-202ENST00000447578 NISCHQ9Y2I1 1504 aa7.23□□□□□ -1.25
VPS29-202ENST00000447578 ZBTB7CA1YPR0 619 aa7.23□□□□□ -1.25
VPS29-202ENST00000447578 ZNF862O60290 1169 aa7.23□□□□□ -1.25
VPS29-202ENST00000447578 PTPN12Q05209 780 aaKnown RBP7.23□□□□□ -1.25
VPS29-202ENST00000447578 CDK5R2Q13319 367 aa7.23□□□□□ -1.25
VPS29-202ENST00000447578 PRPF40BQ6NWY9 871 aaKnown RBP7.23□□□□□ -1.25
VPS29-202ENST00000447578 BNIP3Q12983 259 aa7.22□□□□□ -1.25
VPS29-202ENST00000447578 PI16Q6UXB8 463 aa7.22□□□□□ -1.25
VPS29-202ENST00000447578 SPRED2Q7Z698 418 aa7.22□□□□□ -1.25
VPS29-202ENST00000447578 TXNDC2Q86VQ3 553 aa7.22□□□□□ -1.25
VPS29-202ENST00000447578 WFDC3Q8IUB2 231 aa7.22□□□□□ -1.25
VPS29-202ENST00000447578 BCL7CQ8WUZ0 217 aaPredicted RBP7.22□□□□□ -1.25
VPS29-202ENST00000447578 FANCD2OSQ96PS1 177 aa7.22□□□□□ -1.25
VPS29-202ENST00000447578 CITED4Q96RK1 184 aa7.22□□□□□ -1.25
VPS29-202ENST00000447578 DNAJC25Q9H1X3 360 aa7.22□□□□□ -1.25
VPS29-202ENST00000447578 CRIM1Q9NZV1 1036 aa7.22□□□□□ -1.25
VPS29-202ENST00000447578 DBX1A6NMT0 343 aa7.21□□□□□ -1.26
VPS29-202ENST00000447578 FAM87AP0C7U9 286 aa7.21□□□□□ -1.26
VPS29-202ENST00000447578 ITGB5P18084 799 aa7.21□□□□□ -1.26
VPS29-202ENST00000447578 RPS26P11Q5JNZ5 115 aaPredicted RBP7.21□□□□□ -1.26
VPS29-202ENST00000447578 FAM181AQ8N9Y4 354 aa7.21□□□□□ -1.26
VPS29-202ENST00000447578 AGBL5Q8NDL9 886 aa7.21□□□□□ -1.26
VPS29-202ENST00000447578 CSRNP1Q96S65 589 aa7.21□□□□□ -1.26
VPS29-202ENST00000447578 DISC1Q9NRI5 854 aa7.21□□□□□ -1.26
VPS29-202ENST00000447578 SLC5A6Q9Y289 635 aa7.21□□□□□ -1.26
VPS29-202ENST00000447578 SYNGAP1Q96PV0 1343 aa7.21□□□□□ -1.26
VPS29-202ENST00000447578 GSTP1P09211 210 aaKnown RBP7.2□□□□□ -1.26
VPS29-202ENST00000447578 FCGRTP55899 365 aa7.2□□□□□ -1.26
VPS29-202ENST00000447578 PIDD1Q9HB75 910 aa7.2□□□□□ -1.26
VPS29-202ENST00000447578 TRAK1Q9UPV9 953 aa7.2□□□□□ -1.26
VPS29-202ENST00000447578 U3KQE9 123 aa7.2□□□□□ -1.26
VPS29-202ENST00000447578 SLFN14P0C7P3 912 aa7.19□□□□□ -1.26
VPS29-202ENST00000447578 HCLS1P14317 486 aaPredicted RBP7.19□□□□□ -1.26
VPS29-202ENST00000447578 ID3Q02535 119 aa7.19□□□□□ -1.26
VPS29-202ENST00000447578 TTLL4Q14679 1199 aa7.19□□□□□ -1.26
VPS29-202ENST00000447578 CYP27C1Q4G0S4 372 aa7.19□□□□□ -1.26
VPS29-202ENST00000447578 DTHD1Q6ZMT9 781 aa7.19□□□□□ -1.26
VPS29-202ENST00000447578 PLD6Q8N2A8 252 aaKnown RBP7.19□□□□□ -1.26
VPS29-202ENST00000447578 STK35Q8TDR2 534 aa7.19□□□□□ -1.26
VPS29-202ENST00000447578 GPN3Q9UHW5 284 aaPredicted RBP7.19□□□□□ -1.26
VPS29-202ENST00000447578 PCDHGC5Q9Y5F6 944 aa7.19□□□□□ -1.26
VPS29-202ENST00000447578 RNGTTO60942 597 aaKnown RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms