RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 TRMT1Q9NXH9 659 aaKnown RBP13.69□□□□□ -0.22
CD44-209ENST00000433892 PAXBP1Q9Y5B6 917 aa13.69□□□□□ -0.22
CD44-209ENST00000433892 DDX60Q8IY21 1712 aaKnown RBP13.69□□□□□ -0.22
CD44-209ENST00000433892 TCRBV5S4A2TA0A5A2 114 aa13.69□□□□□ -0.22
CD44-209ENST00000433892 SNAP23O00161 211 aa13.69□□□□□ -0.22
CD44-209ENST00000433892 SMC2O95347 1197 aa13.69□□□□□ -0.22
CD44-209ENST00000433892 GNL2Q13823 731 aaKnown RBP13.69□□□□□ -0.22
CD44-209ENST00000433892 NFXL1Q6ZNB6 911 aa13.69□□□□□ -0.22
CD44-209ENST00000433892 SYTL4Q96C24 671 aaPredicted RBP13.69□□□□□ -0.22
CD44-209ENST00000433892 STRBPQ96SI9 672 aaKnown RBP13.69□□□□□ -0.22
CD44-209ENST00000433892 BTG4Q9NY30 223 aa13.69□□□□□ -0.22
CD44-209ENST00000433892 MYO5AQ9Y4I1 1855 aaKnown RBP13.69□□□□□ -0.22
CD44-209ENST00000433892 ATRNO75882 1429 aa13.68□□□□□ -0.22
CD44-209ENST00000433892 UBE2Q2LH0YL09 131 aa13.68□□□□□ -0.22
CD44-209ENST00000433892 ZBTB43O43298 467 aa13.68□□□□□ -0.22
CD44-209ENST00000433892 PDE8AO60658 829 aa13.68□□□□□ -0.22
CD44-209ENST00000433892 CDKL5O76039 1030 aa13.68□□□□□ -0.22
CD44-209ENST00000433892 ARID4AP29374 1257 aaPredicted RBP13.68□□□□□ -0.22
CD44-209ENST00000433892 CCDC112Q8NEF3 446 aa13.68□□□□□ -0.22
CD44-209ENST00000433892 IGDCC4Q8TDY8 1250 aa13.68□□□□□ -0.22
CD44-209ENST00000433892 XPO4Q9C0E2 1151 aaKnown RBP13.68□□□□□ -0.22
CD44-209ENST00000433892 BCL11BQ9C0K0 894 aaPredicted RBP13.68□□□□□ -0.22
CD44-209ENST00000433892 IFNKQ9P0W0 207 aa13.68□□□□□ -0.22
CD44-209ENST00000433892 C4AP0C0L4 1744 aa13.68□□□□□ -0.22
CD44-209ENST00000433892 C4BP0C0L5 1744 aa13.68□□□□□ -0.22
CD44-209ENST00000433892 NLRP12P59046 1061 aa13.67□□□□□ -0.22
CD44-209ENST00000433892 NCBP1Q09161 790 aaKnown RBP13.67□□□□□ -0.22
CD44-209ENST00000433892 PUM3Q15397 648 aaKnown RBP13.67□□□□□ -0.22
CD44-209ENST00000433892 CPLX2Q6PUV4 134 aaKnown RBP13.67□□□□□ -0.22
CD44-209ENST00000433892 BPIFA3Q9BQP9 254 aa13.67□□□□□ -0.22
CD44-209ENST00000433892 LY9Q9HBG7 655 aa13.67□□□□□ -0.22
CD44-209ENST00000433892 UBN2Q6ZU65 1347 aa13.67□□□□□ -0.22
CD44-209ENST00000433892 RANBP6O60518 1105 aaKnown RBP13.67□□□□□ -0.22
CD44-209ENST00000433892 UQCRFS1P1P0C7P4 283 aa13.67□□□□□ -0.22
CD44-209ENST00000433892 IARSP41252 1262 aaKnown RBP13.67□□□□□ -0.22
CD44-209ENST00000433892 SYKP43405 635 aa13.67□□□□□ -0.22
CD44-209ENST00000433892 CTDSPL2Q05D32 466 aa13.67□□□□□ -0.22
CD44-209ENST00000433892 NAA30Q147X3 362 aaPredicted RBP13.67□□□□□ -0.22
CD44-209ENST00000433892 PTPN14Q15678 1187 aa13.67□□□□□ -0.22
CD44-209ENST00000433892 TMEM67Q5HYA8 995 aa13.67□□□□□ -0.22
CD44-209ENST00000433892 DZIP3Q86Y13 1208 aaKnown RBP13.67□□□□□ -0.22
CD44-209ENST00000433892 LPIN2Q92539 896 aa13.67□□□□□ -0.22
CD44-209ENST00000433892 TMEM87BQ96K49 555 aa13.67□□□□□ -0.22
CD44-209ENST00000433892 GOLGA8AA7E2F4 631 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 GSDMDP57764 484 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 CBX1P83916 185 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 NTRK3Q16288 839 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 SHC4Q6S5L8 630 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 NYAP1Q6ZVC0 841 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 MAGEB6Q8N7X4 407 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 SPATA5Q8NB90 893 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 CLIC6Q96NY7 704 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 EPB41L4AQ9HCS5 686 aaPredicted RBP13.66□□□□□ -0.22
CD44-209ENST00000433892 FAM217BQ9NTX9 383 aaPredicted RBP13.66□□□□□ -0.22
CD44-209ENST00000433892 ZSWIM5Q9P217 1185 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 ABCA3Q99758 1704 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 MBD4O95243 580 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 NCAPHQ15003 741 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 PTPAQ15257 358 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 TMC6Q7Z403 805 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 IFNL3Q8IZI9 196 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 CCAR2Q8N163 923 aaKnown RBP13.66□□□□□ -0.22
CD44-209ENST00000433892 OSBPL5Q9H0X9 879 aaPredicted RBP13.66□□□□□ -0.22
CD44-209ENST00000433892 ARMT1Q9H993 441 aa13.66□□□□□ -0.22
CD44-209ENST00000433892 PATL2C9JE40 543 aaKnown RBP13.65□□□□□ -0.22
CD44-209ENST00000433892 FGFR2P21802 821 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 LMOD1P29536 600 aaPredicted RBP13.65□□□□□ -0.22
CD44-209ENST00000433892 RASGRF1Q13972 1273 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 TRIM29Q14134 588 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 MAP3K14Q99558 947 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 SLC26A6Q9BXS9 759 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 NAPBQ9H115 298 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 PRDM10Q9NQV6 1147 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 IMPACTQ9P2X3 320 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 TACC3Q9Y6A5 838 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 ZNF335Q9H4Z2 1342 aaPredicted RBP13.65□□□□□ -0.22
CD44-209ENST00000433892 BCL9O00512 1426 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 SPDYE4A6NLX3 237 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 IFIT3O14879 490 aaKnown RBP13.65□□□□□ -0.22
CD44-209ENST00000433892 PPP6R2O75170 966 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 U2AF2P26368 475 aaKnown RBP eCLIP13.65□□□□□ -0.22
CD44-209ENST00000433892 TPM4P67936 248 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 SGMS1Q86VZ5 419 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 JMYQ8N9B5 988 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 HPSEQ9Y251 543 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 SLC12A7Q9Y666 1083 aa13.65□□□□□ -0.22
CD44-209ENST00000433892 MROH5Q6ZUA9 1318 aa13.64□□□□□ -0.23
CD44-209ENST00000433892 MYH3P11055 1940 aa13.64□□□□□ -0.23
CD44-209ENST00000433892 ITGB4P16144 1822 aa13.64□□□□□ -0.23
CD44-209ENST00000433892 PRKAB2O43741 272 aa13.64□□□□□ -0.23
CD44-209ENST00000433892 ATP1A3P13637 1013 aa13.64□□□□□ -0.23
CD44-209ENST00000433892 MAP3K12Q12852 859 aa13.64□□□□□ -0.23
CD44-209ENST00000433892 PNOCQ13519 176 aa13.64□□□□□ -0.23
CD44-209ENST00000433892 ALX1Q15699 326 aa13.64□□□□□ -0.23
CD44-209ENST00000433892 ARMCX5Q6P1M9 558 aa13.64□□□□□ -0.23
CD44-209ENST00000433892 STK11IPQ8N1F8 1099 aa13.64□□□□□ -0.23
CD44-209ENST00000433892 TIGD1Q96MW7 591 aa13.64□□□□□ -0.23
CD44-209ENST00000433892 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.64□□□□□ -0.23
CD44-209ENST00000433892 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.64□□□□□ -0.23
CD44-209ENST00000433892 LRP6O75581 1613 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms