RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 TWISTNBQ3B726 338 aaPredicted RBP9.53□□□□□ -0.88
LIMS1-203ENST00000393310 CTR9Q6PD62 1173 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 RPUSD2Q8IZ73 545 aaKnown RBP9.53□□□□□ -0.88
LIMS1-203ENST00000393310 ZNF513Q8N8E2 541 aaPredicted RBP9.53□□□□□ -0.88
LIMS1-203ENST00000393310 MROH5Q6ZUA9 1318 aa9.53□□□□□ -0.88
LIMS1-203ENST00000393310 ERICH4A6NGS2 130 aa9.52□□□□□ -0.88
LIMS1-203ENST00000393310 SLC4A2P04920 1241 aa9.52□□□□□ -0.88
LIMS1-203ENST00000393310 IGFBP4P22692 258 aa9.52□□□□□ -0.88
LIMS1-203ENST00000393310 BECN1Q14457 450 aa9.52□□□□□ -0.88
LIMS1-203ENST00000393310 RAB30Q15771 203 aa9.52□□□□□ -0.88
LIMS1-203ENST00000393310 CRNKL1Q9BZJ0 848 aaKnown RBP9.52□□□□□ -0.88
LIMS1-203ENST00000393310 DEFB129Q9H1M3 183 aa9.52□□□□□ -0.88
LIMS1-203ENST00000393310 IL13P35225 146 aa9.52□□□□□ -0.89
LIMS1-203ENST00000393310 SSTR3P32745 418 aaPredicted RBP9.52□□□□□ -0.89
LIMS1-203ENST00000393310 PTF1AQ7RTS3 328 aa9.52□□□□□ -0.89
LIMS1-203ENST00000393310 LINS1Q8NG48 757 aa9.52□□□□□ -0.89
LIMS1-203ENST00000393310 CCDC43Q96MW1 224 aaKnown RBP9.52□□□□□ -0.89
LIMS1-203ENST00000393310 USP16Q9Y5T5 823 aa9.52□□□□□ -0.89
LIMS1-203ENST00000393310 QRICH2Q9H0J4 1663 aa9.52□□□□□ -0.89
LIMS1-203ENST00000393310 SEMA3EO15041 775 aa9.52□□□□□ -0.89
LIMS1-203ENST00000393310 FBLN1P23142 703 aa9.52□□□□□ -0.89
LIMS1-203ENST00000393310 MFAP1P55081 439 aaKnown RBP9.52□□□□□ -0.89
LIMS1-203ENST00000393310 MAP3K11Q16584 847 aa9.52□□□□□ -0.89
LIMS1-203ENST00000393310 ODR4Q5SWX8 454 aa9.52□□□□□ -0.89
LIMS1-203ENST00000393310 INTS5Q6P9B9 1019 aaKnown RBP9.52□□□□□ -0.89
LIMS1-203ENST00000393310 RGS22Q8NE09 1264 aa9.52□□□□□ -0.89
LIMS1-203ENST00000393310 KIF3AQ9Y496 699 aa9.52□□□□□ -0.89
LIMS1-203ENST00000393310 SIGLEC1Q9BZZ2 1709 aa9.51□□□□□ -0.89
LIMS1-203ENST00000393310 A0A1W2PPC1 479 aa9.51□□□□□ -0.89
LIMS1-203ENST00000393310 CD99L2Q8TCZ2 262 aa9.51□□□□□ -0.89
LIMS1-203ENST00000393310 GTPBP4Q9BZE4 634 aaKnown RBP9.51□□□□□ -0.89
LIMS1-203ENST00000393310 USP40Q9NVE5 1235 aa9.51□□□□□ -0.89
LIMS1-203ENST00000393310 FAM205AQ6ZU69 1335 aa9.51□□□□□ -0.89
LIMS1-203ENST00000393310 MARCH6O60337 910 aa9.51□□□□□ -0.89
LIMS1-203ENST00000393310 CHMP4BP1P59074 171 aa9.51□□□□□ -0.89
LIMS1-203ENST00000393310 HDLBPQ00341 1268 aaKnown RBP9.51□□□□□ -0.89
LIMS1-203ENST00000393310 DDX10Q13206 875 aaKnown RBP9.51□□□□□ -0.89
LIMS1-203ENST00000393310 TTF1Q15361 905 aaPredicted RBP9.51□□□□□ -0.89
LIMS1-203ENST00000393310 WNK4Q96J92 1243 aa9.51□□□□□ -0.89
LIMS1-203ENST00000393310 MYCBPQ99417 103 aaPredicted RBP9.51□□□□□ -0.89
LIMS1-203ENST00000393310 C1QTNF1Q9BXJ1 281 aa9.51□□□□□ -0.89
LIMS1-203ENST00000393310 SEZ6LQ9BYH1 1024 aa9.51□□□□□ -0.89
LIMS1-203ENST00000393310 SASH1O94885 1247 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 CTSWP56202 376 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 SPRYD7Q5W111 196 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 DHX36Q9H2U1 1008 aaKnown RBP9.5□□□□□ -0.89
LIMS1-203ENST00000393310 FRMD4BQ9Y2L6 1034 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 MAP3K2Q9Y2U5 619 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 ASNSP08243 561 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 TRAF5O00463 557 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 PICALMQ13492 652 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 RASA3Q14644 834 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 SUSD4Q5VX71 490 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 NLRP10Q86W26 655 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 HSCBQ8IWL3 235 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 ZNF444Q8N0Y2 327 aaPredicted RBP9.5□□□□□ -0.89
LIMS1-203ENST00000393310 CCDC82Q8N4S0 544 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 ZNF296Q8WUU4 475 aaPredicted RBP9.5□□□□□ -0.89
LIMS1-203ENST00000393310 MKNK2Q9HBH9 465 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 CTNNA3Q9UI47 895 aa9.5□□□□□ -0.89
LIMS1-203ENST00000393310 ERICH2A1L162 156 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 SF3B3Q15393 1217 aaKnown RBP9.49□□□□□ -0.89
LIMS1-203ENST00000393310 TEX11Q8IYF3 940 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 NUP133Q8WUM0 1156 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 METTL22Q9BUU2 404 aaPredicted RBP9.49□□□□□ -0.89
LIMS1-203ENST00000393310 CALCOCO1Q9P1Z2 691 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 C19orf81C9J6K1 198 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 ZBTB24O43167 697 aaPredicted RBP9.49□□□□□ -0.89
LIMS1-203ENST00000393310 SLC10A5Q5PT55 438 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 SYNE3Q6ZMZ3 975 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 RUFY4Q6ZNE9 571 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 C7orf61Q8IZ16 206 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 MICALL1Q8N3F8 863 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 M0QZ92 97 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 TPM3P06753 285 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 PPP2R1AP30153 589 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 SH3BGRP55822 239 aaPredicted RBP9.49□□□□□ -0.89
LIMS1-203ENST00000393310 MAP2K5Q13163 448 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 CHRDL2Q6WN34 429 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 ANKLE1Q8NAG6 615 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 GLT1D1Q96MS3 346 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 TANGO6Q9C0B7 1094 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 PARP4Q9UKK3 1724 aaKnown RBP9.49□□□□□ -0.89
LIMS1-203ENST00000393310 MROH7Q68CQ1 1323 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 ADM5C9JUS6 153 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 RARBP10826 455 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 ITGA6P23229 1130 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 RPAINQ86UA6 219 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 MIER1Q8N108 512 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 TMEM199Q8N511 208 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 TBC1D16Q8TBP0 767 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 CCDC34Q96HJ3 373 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 FTOQ9C0B1 505 aaKnown RBP eCLIP9.49□□□□□ -0.89
LIMS1-203ENST00000393310 FBXO40Q9UH90 709 aa9.49□□□□□ -0.89
LIMS1-203ENST00000393310 KNDC1Q76NI1 1749 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 ABCC4O15439 1325 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 HMGCRP04035 888 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 RDXP35241 583 aaKnown RBP9.48□□□□□ -0.89
LIMS1-203ENST00000393310 PIP4K2AP48426 406 aaPredicted RBP9.48□□□□□ -0.89
LIMS1-203ENST00000393310 NONOQ15233 471 aaKnown RBP eCLIP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms