RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SBNO2Q9Y2G9 1366 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 SPOPO43791 374 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 GBP1P32455 592 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 B4GALNT4Q76KP1 1039 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 SRGAP1Q7Z6B7 1085 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 CACNA2D3Q8IZS8 1091 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 WDR7Q9Y4E6 1490 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 NESP48681 1621 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 DKC1O60832 514 aaKnown RBP eCLIP14.33□□□□□ -0.125e-9■■■■■ 40.8
CCDC88C-204ENST00000389857 SATB1Q01826 763 aa14.33□□□□□ -0.12
CCDC88C-204ENST00000389857 APOBRQ0VD83 1088 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 MAP7Q14244 749 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 NOC4LQ9BVI4 516 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 EIF2AK4Q9P2K8 1649 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 CHRNA2Q15822 529 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 CREB3L3Q68CJ9 461 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 KRT9P35527 623 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 SARNPP82979 210 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 TRPC3Q13507 836 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 BRDTQ58F21 947 aaPredicted RBP14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 HAUS3Q68CZ6 603 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 SIRT1Q96EB6 747 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 VCX3BQ9H321 246 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 KIF3CO14782 793 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 DHX32Q7L7V1 743 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 TTC6Q86TZ1 520 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 BAG1Q99933 345 aaPredicted RBP14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 TMOD4Q9NZQ9 345 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 RAD50Q92878 1312 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 GLT8D2Q9H1C3 349 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 PICK1Q9NRD5 415 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 PTPDC1A2A3K4 754 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 SKAP1Q86WV1 359 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 TACC3Q9Y6A5 838 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 PPIP5K1Q6PFW1 1433 aa14.32□□□□□ -0.12
CCDC88C-204ENST00000389857 ANXA1P04083 346 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 HSPA1LP34931 641 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 CCT6AP40227 531 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 ASIC2Q16515 512 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 TCEANC2Q96MN5 208 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 ZKSCAN3Q9BRR0 538 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 ARHGEF10LQ9HCE6 1279 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 VIMP08670 466 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 CACYBPQ9HB71 228 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 HELLSQ9NRZ9 838 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 DENND2AQ9ULE3 1009 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 NOX5Q96PH1 765 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 ZKSCAN5Q9Y2L8 839 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 TRAF5O00463 557 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 NEDD9Q14511 834 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 MIGA1Q8NAN2 632 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 DENND4BO75064 1496 aaPredicted RBP14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 DNAJC21Q5F1R6 531 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 CYP26C1Q6V0L0 522 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 TAOK1Q7L7X3 1001 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 MRPL50Q8N5N7 158 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 PROCA1Q8NCQ7 364 aaPredicted RBP14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 C14orf93Q9H972 538 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 NPHP3Q7Z494 1330 aa14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 GIGYF1O75420 1035 aaPredicted RBP14.31□□□□□ -0.12
CCDC88C-204ENST00000389857 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 CASQ2O14958 399 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 DDB1Q16531 1140 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 RBM26Q5T8P6 1007 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 CROCCP2Q86T23 111 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 PPANQ9NQ55 473 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 SP4Q02446 784 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 GABPAQ06546 454 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 CEP120Q8N960 986 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 IRS4O14654 1257 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 CCDC125Q86Z20 511 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 HMGXB3Q12766 1538 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 A6NNZ2 444 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 CUL4BQ13620 913 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 TUBB8Q3ZCM7 444 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 HS1BP3Q53T59 392 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 GKAP1Q5VSY0 366 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 SYT10Q6XYQ8 523 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 VWA3AA6NCI4 1184 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 AK2P54819 239 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 NSMCE1Q8WV22 266 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 BIN2Q9UBW5 565 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 MYL5Q02045 173 aa14.3□□□□□ -0.12
CCDC88C-204ENST00000389857 CCDC169A6NNP5 214 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 CCNT1O60563 726 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 PPP2R3AQ06190 1150 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 RILPL1Q5EBL4 403 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 PLIN2Q99541 437 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 NUP58Q9BVL2 599 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 ZNF710Q8N1W2 664 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 CCDC94Q9BW85 323 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 NOD1Q9Y239 953 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 IDI1Q13907 227 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 KMT5BQ4FZB7 885 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 ZNF365Q70YC5 407 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 CHST3Q7LGC8 479 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 CERS3Q8IU89 383 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 AFAP1L1Q8TED9 768 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 NUF2Q9BZD4 464 aa14.29□□□□□ -0.12
CCDC88C-204ENST00000389857 VCXQ9H320 206 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms