RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 BRPF3Q9ULD4 1205 aa29.61■■■□□ 2.33
SHOX2-201ENST00000389589 NEDD4P46934 1319 aa29.6■■■□□ 2.33
SHOX2-201ENST00000389589 MFSD6Q6ZSS7 791 aa29.6■■■□□ 2.33
SHOX2-201ENST00000389589 CYB5R4Q7L1T6 521 aa29.6■■■□□ 2.33
SHOX2-201ENST00000389589 B4E1Z4 1266 aa29.6■■■□□ 2.33
SHOX2-201ENST00000389589 H3BQV1 296 aa29.6■■■□□ 2.33
SHOX2-201ENST00000389589 SH2B2O14492 632 aaPredicted RBP29.6■■■□□ 2.33
SHOX2-201ENST00000389589 ZNF445P59923 1031 aa29.6■■■□□ 2.33
SHOX2-201ENST00000389589 DNM1Q05193 864 aaKnown RBP29.6■■■□□ 2.33
SHOX2-201ENST00000389589 IFFO2Q5TF58 517 aa29.6■■■□□ 2.33
SHOX2-201ENST00000389589 ZNF804AQ7Z570 1209 aa29.6■■■□□ 2.33
SHOX2-201ENST00000389589 RNF41Q9H4P4 317 aaPredicted RBP29.6■■■□□ 2.33
SHOX2-201ENST00000389589 NCOA5Q9HCD5 579 aaKnown RBP29.6■■■□□ 2.33
SHOX2-201ENST00000389589 TNS1Q9HBL0 1735 aaKnown RBP29.6■■■□□ 2.33
SHOX2-201ENST00000389589 GOLGA8BA8MQT2 603 aa29.59■■■□□ 2.33
SHOX2-201ENST00000389589 ATP2B4P23634 1241 aa29.59■■■□□ 2.33
SHOX2-201ENST00000389589 MRE11P49959 708 aa29.59■■■□□ 2.33
SHOX2-201ENST00000389589 CTDSPL2Q05D32 466 aa29.59■■■□□ 2.33
SHOX2-201ENST00000389589 CHAF1AQ13111 956 aaPredicted RBP29.59■■■□□ 2.33
SHOX2-201ENST00000389589 ANKRD31Q8N7Z5 1873 aa29.59■■■□□ 2.33
SHOX2-201ENST00000389589 MECOMQ03112 1051 aa29.59■■■□□ 2.33
SHOX2-201ENST00000389589 TMC4Q7Z404 712 aa29.59■■■□□ 2.33
SHOX2-201ENST00000389589 KRT85P78386 507 aa29.58■■■□□ 2.33
SHOX2-201ENST00000389589 ZSCAN23Q3MJ62 389 aa29.58■■■□□ 2.33
SHOX2-201ENST00000389589 GIMAP6Q6P9H5 292 aa29.58■■■□□ 2.33
SHOX2-201ENST00000389589 WDR66Q8TBY9 1149 aa29.58■■■□□ 2.33
SHOX2-201ENST00000389589 ZNF384Q8TF68 577 aa29.58■■■□□ 2.33
SHOX2-201ENST00000389589 SYAP1Q96A49 352 aaPredicted RBP29.58■■■□□ 2.33
SHOX2-201ENST00000389589 BRIP1Q9BX63 1249 aa29.58■■■□□ 2.33
SHOX2-201ENST00000389589 LRRC37AA6NMS7 1700 aa29.58■■■□□ 2.33
SHOX2-201ENST00000389589 GPSM2P81274 684 aa29.57■■■□□ 2.32
SHOX2-201ENST00000389589 TDRD7Q8NHU6 1098 aaKnown RBP29.57■■■□□ 2.32
SHOX2-201ENST00000389589 ZSCAN16Q9H4T2 348 aaPredicted RBP29.57■■■□□ 2.32
SHOX2-201ENST00000389589 ANAPC4Q9UJX5 808 aa29.57■■■□□ 2.32
SHOX2-201ENST00000389589 HPS5Q9UPZ3 1129 aa29.57■■■□□ 2.32
SHOX2-201ENST00000389589 UBE2HP62256 183 aa29.57■■■□□ 2.32
SHOX2-201ENST00000389589 FERMT3Q86UX7 667 aa29.57■■■□□ 2.32
SHOX2-201ENST00000389589 COL23A1Q86Y22 540 aaPredicted RBP29.57■■■□□ 2.32
SHOX2-201ENST00000389589 MTA3Q9BTC8 594 aa29.57■■■□□ 2.32
SHOX2-201ENST00000389589 BAZ2AQ9UIF9 1905 aaKnown RBP29.57■■■□□ 2.32
SHOX2-201ENST00000389589 MYH15Q9Y2K3 1946 aa29.57■■■□□ 2.32
SHOX2-201ENST00000389589 FIBPO43427 364 aa29.56■■■□□ 2.32
SHOX2-201ENST00000389589 PPARAQ07869 468 aa29.56■■■□□ 2.32
SHOX2-201ENST00000389589 NSFL1CQ9UNZ2 370 aaKnown RBP29.56■■■□□ 2.32
SHOX2-201ENST00000389589 DUOX1Q9NRD9 1551 aa29.56■■■□□ 2.32
SHOX2-201ENST00000389589 GADD45BO75293 160 aaPredicted RBP29.56■■■□□ 2.32
SHOX2-201ENST00000389589 IGDCC4Q8TDY8 1250 aa29.56■■■□□ 2.32
SHOX2-201ENST00000389589 LIFRP42702 1097 aa29.55■■■□□ 2.32
SHOX2-201ENST00000389589 SDR42E1Q8WUS8 393 aa29.55■■■□□ 2.32
SHOX2-201ENST00000389589 PODXL2Q9NZ53 605 aa29.55■■■□□ 2.32
SHOX2-201ENST00000389589 GGA1Q9UJY5 639 aa29.55■■■□□ 2.32
SHOX2-201ENST00000389589 DYNLL1P63167 89 aaKnown RBP29.54■■■□□ 2.32
SHOX2-201ENST00000389589 SGMS1Q86VZ5 419 aa29.54■■■□□ 2.32
SHOX2-201ENST00000389589 TMEM63CQ9P1W3 806 aa29.54■■■□□ 2.32
SHOX2-201ENST00000389589 ZSWIM5Q9P217 1185 aa29.54■■■□□ 2.32
SHOX2-201ENST00000389589 KDM4AO75164 1064 aa29.54■■■□□ 2.32
SHOX2-201ENST00000389589 GRPEL1Q9HAV7 217 aa29.54■■■□□ 2.32
SHOX2-201ENST00000389589 RBM27Q9P2N5 1060 aaKnown RBP29.54■■■□□ 2.32
SHOX2-201ENST00000389589 CPLX1O14810 134 aa29.53■■■□□ 2.32
SHOX2-201ENST00000389589 UFL1O94874 794 aa29.53■■■□□ 2.32
SHOX2-201ENST00000389589 PRDX5P30044 214 aa29.53■■■□□ 2.32
SHOX2-201ENST00000389589 TMEM67Q5HYA8 995 aa29.53■■■□□ 2.32
SHOX2-201ENST00000389589 RESTQ13127 1097 aa29.52■■■□□ 2.32
SHOX2-201ENST00000389589 SART3Q15020 963 aaKnown RBP29.52■■■□□ 2.32
SHOX2-201ENST00000389589 GAS2L3Q86XJ1 694 aa29.52■■■□□ 2.32
SHOX2-201ENST00000389589 NKX2-3Q8TAU0 364 aa29.52■■■□□ 2.32
SHOX2-201ENST00000389589 CRNKL1Q9BZJ0 848 aaKnown RBP29.52■■■□□ 2.32
SHOX2-201ENST00000389589 LY9Q9HBG7 655 aa29.52■■■□□ 2.32
SHOX2-201ENST00000389589 TACC3Q9Y6A5 838 aa29.52■■■□□ 2.32
SHOX2-201ENST00000389589 DZIP1Q86YF9 867 aaKnown RBP29.52■■■□□ 2.32
SHOX2-201ENST00000389589 SCAND2PQ9GZW5 306 aaPredicted RBP29.52■■■□□ 2.32
SHOX2-201ENST00000389589 INCENPQ9NQS7 918 aa29.52■■■□□ 2.32
SHOX2-201ENST00000389589 ELP1O95163 1332 aa29.52■■■□□ 2.32
SHOX2-201ENST00000389589 LAMB1P07942 1786 aa29.51■■■□□ 2.32
SHOX2-201ENST00000389589 IFIT3O14879 490 aaKnown RBP29.51■■■□□ 2.31
SHOX2-201ENST00000389589 XRCC6P12956 609 aaKnown RBP eCLIP29.51■■■□□ 2.31
SHOX2-201ENST00000389589 APOA5Q6Q788 366 aa29.51■■■□□ 2.31
SHOX2-201ENST00000389589 LTBP1Q14766 1721 aa29.51■■■□□ 2.31
SHOX2-201ENST00000389589 PCP11498 1178 aaKnown RBP29.51■■■□□ 2.31
SHOX2-201ENST00000389589 MINDY4BA8MYZ0 360 aa29.5■■■□□ 2.31
SHOX2-201ENST00000389589 LDHBP07195 334 aaKnown RBP29.5■■■□□ 2.31
SHOX2-201ENST00000389589 METAP2P50579 478 aaKnown RBP eCLIP29.5■■■□□ 2.31
SHOX2-201ENST00000389589 NFXL1Q6ZNB6 911 aa29.5■■■□□ 2.31
SHOX2-201ENST00000389589 SLC51AQ86UW1 340 aa29.5■■■□□ 2.31
SHOX2-201ENST00000389589 RGS22Q8NE09 1264 aa29.5■■■□□ 2.31
SHOX2-201ENST00000389589 TOMM22Q9NS69 142 aa29.5■■■□□ 2.31
SHOX2-201ENST00000389589 CDKL5O76039 1030 aa29.49■■■□□ 2.31
SHOX2-201ENST00000389589 FDPSP14324 419 aaKnown RBP29.49■■■□□ 2.31
SHOX2-201ENST00000389589 GSTO1P78417 241 aa29.49■■■□□ 2.31
SHOX2-201ENST00000389589 SP8Q8IXZ3 490 aa29.49■■■□□ 2.31
SHOX2-201ENST00000389589 ATP8A2Q9NTI2 1148 aa29.49■■■□□ 2.31
SHOX2-201ENST00000389589 ZBTB43O43298 467 aa29.49■■■□□ 2.31
SHOX2-201ENST00000389589 RRP12Q5JTH9 1297 aaKnown RBP29.49■■■□□ 2.31
SHOX2-201ENST00000389589 CPLX2Q6PUV4 134 aaKnown RBP29.49■■■□□ 2.31
SHOX2-201ENST00000389589 TMTC2Q8N394 836 aa29.49■■■□□ 2.31
SHOX2-201ENST00000389589 AATFQ9NY61 560 aaKnown RBP eCLIP29.48■■■□□ 2.31
SHOX2-201ENST00000389589 MYH2Q9UKX2 1941 aa29.48■■■□□ 2.31
SHOX2-201ENST00000389589 ERICH2A1L162 156 aa29.48■■■□□ 2.31
SHOX2-201ENST00000389589 CCDC69A6NI79 296 aa29.48■■■□□ 2.31
SHOX2-201ENST00000389589 PPEF1O14829 653 aaPredicted RBP29.48■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms