RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 TAF1CQ15572 869 aaPredicted RBP18■□□□□ 0.47
PRPF40A-201ENST00000354363 ERO1BQ86YB8 467 aa18■□□□□ 0.47
PRPF40A-201ENST00000354363 FAM43AQ8N2R8 423 aa18■□□□□ 0.47
PRPF40A-201ENST00000354363 ZKSCAN4Q969J2 545 aaPredicted RBP18■□□□□ 0.47
PRPF40A-201ENST00000354363 COPRSQ9NQ92 184 aa18■□□□□ 0.47
PRPF40A-201ENST00000354363 PTPN22Q9Y2R2 807 aa18■□□□□ 0.47
PRPF40A-201ENST00000354363 CENPFP49454 3210 aa18■□□□□ 0.47
PRPF40A-201ENST00000354363 SLC34A2O95436 690 aa17.99■□□□□ 0.47
PRPF40A-201ENST00000354363 PHKA1P46020 1223 aa17.99■□□□□ 0.47
PRPF40A-201ENST00000354363 DCAF15Q66K64 600 aa17.99■□□□□ 0.47
PRPF40A-201ENST00000354363 CDC42EP5Q6NZY7 148 aa17.99■□□□□ 0.47
PRPF40A-201ENST00000354363 FAM151AQ8WW52 585 aa17.99■□□□□ 0.47
PRPF40A-201ENST00000354363 EFCC1Q9HA90 598 aa17.99■□□□□ 0.47
PRPF40A-201ENST00000354363 DENND2AQ9ULE3 1009 aa17.99■□□□□ 0.47
PRPF40A-201ENST00000354363 DOCK2Q92608 1830 aa17.99■□□□□ 0.47
PRPF40A-201ENST00000354363 ZSWIM8A7E2V4 1837 aa17.99■□□□□ 0.47
PRPF40A-201ENST00000354363 SALL1Q9NSC2 1324 aa17.98■□□□□ 0.47
PRPF40A-201ENST00000354363 LDHBP07195 334 aaKnown RBP17.98■□□□□ 0.47
PRPF40A-201ENST00000354363 INTS3Q68E01 1043 aaKnown RBP17.98■□□□□ 0.47
PRPF40A-201ENST00000354363 MIGA2Q7L4E1 593 aa17.98■□□□□ 0.47
PRPF40A-201ENST00000354363 ARHGAP45Q92619 1136 aa17.98■□□□□ 0.47
PRPF40A-201ENST00000354363 ZNF341Q9BYN7 854 aa17.98■□□□□ 0.47
PRPF40A-201ENST00000354363 ZFYVE28Q9HCC9 887 aa17.98■□□□□ 0.47
PRPF40A-201ENST00000354363 SEMA3EO15041 775 aa17.98■□□□□ 0.47
PRPF40A-201ENST00000354363 ADORA1P30542 326 aa17.98■□□□□ 0.47
PRPF40A-201ENST00000354363 IRF6O14896 467 aa17.97■□□□□ 0.47
PRPF40A-201ENST00000354363 ZBTB22O15209 634 aa17.97■□□□□ 0.47
PRPF40A-201ENST00000354363 CETPP11597 493 aa17.97■□□□□ 0.47
PRPF40A-201ENST00000354363 TCP10Q12799 353 aa17.97■□□□□ 0.47
PRPF40A-201ENST00000354363 NFIAQ12857 509 aa17.97■□□□□ 0.47
PRPF40A-201ENST00000354363 PPIL2Q13356 520 aa17.97■□□□□ 0.47
PRPF40A-201ENST00000354363 INPP5BP32019 993 aa17.96■□□□□ 0.47
PRPF40A-201ENST00000354363 SNAPC2Q13487 334 aa17.96■□□□□ 0.47
PRPF40A-201ENST00000354363 CCDC102BQ68D86 513 aa17.96■□□□□ 0.47
PRPF40A-201ENST00000354363 FAM198AQ9UFP1 575 aa17.96■□□□□ 0.47
PRPF40A-201ENST00000354363 BTBD19C9JJ37 291 aa17.95■□□□□ 0.46
PRPF40A-201ENST00000354363 GNAI3P08754 354 aa17.95■□□□□ 0.46
PRPF40A-201ENST00000354363 ZCCHC17Q9NP64 241 aaKnown RBP17.95■□□□□ 0.46
PRPF40A-201ENST00000354363 USP40Q9NVE5 1235 aa17.95■□□□□ 0.46
PRPF40A-201ENST00000354363 ZNF112Q9UJU3 913 aa17.95■□□□□ 0.46
PRPF40A-201ENST00000354363 POTEFA5A3E0 1075 aa17.94■□□□□ 0.46
PRPF40A-201ENST00000354363 TIMM10P62072 90 aa17.94■□□□□ 0.46
PRPF40A-201ENST00000354363 PPATQ06203 517 aa17.94■□□□□ 0.46
PRPF40A-201ENST00000354363 PRPF38BQ5VTL8 546 aaKnown RBP17.94■□□□□ 0.46
PRPF40A-201ENST00000354363 ARMC5Q96C12 935 aa17.94■□□□□ 0.46
PRPF40A-201ENST00000354363 SRGAP3O43295 1099 aa17.94■□□□□ 0.46
PRPF40A-201ENST00000354363 MTX1Q13505 466 aa17.94■□□□□ 0.46
PRPF40A-201ENST00000354363 RASGRF1Q13972 1273 aa17.94■□□□□ 0.46
PRPF40A-201ENST00000354363 ZGPATQ8N5A5 531 aaKnown RBP17.94■□□□□ 0.46
PRPF40A-201ENST00000354363 GAKO14976 1311 aa17.93■□□□□ 0.46
PRPF40A-201ENST00000354363 TLR2O60603 784 aa17.93■□□□□ 0.46
PRPF40A-201ENST00000354363 WDHD1O75717 1129 aaPredicted RBP17.93■□□□□ 0.46
PRPF40A-201ENST00000354363 ARHGEF6Q15052 776 aa17.93■□□□□ 0.46
PRPF40A-201ENST00000354363 ZFPM1Q8IX07 1006 aa17.93■□□□□ 0.46
PRPF40A-201ENST00000354363 MKI67P46013 3256 aaKnown RBP17.93■□□□□ 0.46
PRPF40A-201ENST00000354363 PDS5AQ29RF7 1337 aaKnown RBP17.92■□□□□ 0.46
PRPF40A-201ENST00000354363 PTPRFP10586 1907 aa17.92■□□□□ 0.46
PRPF40A-201ENST00000354363 A0A1B0GUL7 405 aa17.92■□□□□ 0.46
PRPF40A-201ENST00000354363 TRIM27P14373 513 aa17.92■□□□□ 0.46
PRPF40A-201ENST00000354363 TFCP2Q12800 502 aa17.92■□□□□ 0.46
PRPF40A-201ENST00000354363 NOL9Q5SY16 702 aaKnown RBP17.92■□□□□ 0.46
PRPF40A-201ENST00000354363 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.92■□□□□ 0.46
PRPF40A-201ENST00000354363 XAGE2Q96GT9 111 aa17.92■□□□□ 0.46
PRPF40A-201ENST00000354363 TNNQ9UQP3 1299 aa17.92■□□□□ 0.46
PRPF40A-201ENST00000354363 AKAP2Q9Y2D5 859 aa17.92■□□□□ 0.46
PRPF40A-201ENST00000354363 BRCA2P51587 3418 aa17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 IPO8O15397 1037 aaKnown RBP17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 RGS3P49796 1198 aa17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 IDI2Q9BXS1 227 aa17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 ABCF2Q9UG63 623 aa17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 KCNH4Q9UQ05 1017 aa17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 PTCH2Q9Y6C5 1203 aa17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 PHIPQ8WWQ0 1821 aa17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 DOCK1Q14185 1865 aa17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 RFX7Q2KHR2 1363 aa17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 ATRNL1Q5VV63 1379 aa17.91■□□□□ 0.46
PRPF40A-201ENST00000354363 BCAR3O75815 825 aa17.9■□□□□ 0.46
PRPF40A-201ENST00000354363 DZIP1Q86YF9 867 aaKnown RBP17.9■□□□□ 0.46
PRPF40A-201ENST00000354363 ARHGAP39Q9C0H5 1083 aa17.9■□□□□ 0.46
PRPF40A-201ENST00000354363 MGAMO43451 1857 aa17.9■□□□□ 0.46
PRPF40A-201ENST00000354363 ENTPD3O75355 529 aa17.9■□□□□ 0.46
PRPF40A-201ENST00000354363 MVPQ14764 893 aaKnown RBP17.9■□□□□ 0.46
PRPF40A-201ENST00000354363 ATF7IPQ6VMQ6 1270 aa17.9■□□□□ 0.46
PRPF40A-201ENST00000354363 ANKRD23Q86SG2 305 aa17.9■□□□□ 0.46
PRPF40A-201ENST00000354363 FAM163AQ96GL9 167 aaPredicted RBP17.9■□□□□ 0.46
PRPF40A-201ENST00000354363 LACTBP83111 547 aaPredicted RBP17.89■□□□□ 0.45
PRPF40A-201ENST00000354363 MOGSQ13724 837 aa17.89■□□□□ 0.45
PRPF40A-201ENST00000354363 SPTY2D1Q68D10 685 aaPredicted RBP17.89■□□□□ 0.45
PRPF40A-201ENST00000354363 SLF2Q8IX21 1173 aa17.89■□□□□ 0.45
PRPF40A-201ENST00000354363 FRAT1Q92837 279 aaPredicted RBP17.89■□□□□ 0.45
PRPF40A-201ENST00000354363 ZNF333Q96JL9 665 aa17.89■□□□□ 0.45
PRPF40A-201ENST00000354363 GNAI2P04899 355 aa17.88■□□□□ 0.45
PRPF40A-201ENST00000354363 KIF22Q14807 665 aa17.88■□□□□ 0.45
PRPF40A-201ENST00000354363 SLC9C1Q4G0N8 1177 aa17.88■□□□□ 0.45
PRPF40A-201ENST00000354363 C17orf99Q6UX52 265 aa17.88■□□□□ 0.45
PRPF40A-201ENST00000354363 SH3BP5LQ7L8J4 393 aa17.88■□□□□ 0.45
PRPF40A-201ENST00000354363 NEUROD6Q96NK8 337 aa17.88■□□□□ 0.45
PRPF40A-201ENST00000354363 PNMA6EA0A0J9YXQ4 647 aa17.87■□□□□ 0.45
PRPF40A-201ENST00000354363 PHF20L1A8MW92 1017 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 159.3 ms