RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 MAP3K5Q99683 1374 aa11.59□□□□□ -0.55
CLDN1-201ENST00000295522 CCDC196A0A1B0GTZ2 297 aa11.59□□□□□ -0.55
CLDN1-201ENST00000295522 GOLIM4O00461 696 aa11.59□□□□□ -0.55
CLDN1-201ENST00000295522 RXRAP19793 462 aa11.59□□□□□ -0.55
CLDN1-201ENST00000295522 LMOD2Q6P5Q4 547 aa11.59□□□□□ -0.55
CLDN1-201ENST00000295522 FCHSD1Q86WN1 690 aa11.59□□□□□ -0.55
CLDN1-201ENST00000295522 TICAM2Q86XR7 235 aa11.59□□□□□ -0.55
CLDN1-201ENST00000295522 TC2NQ8N9U0 490 aa11.59□□□□□ -0.55
CLDN1-201ENST00000295522 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.59□□□□□ -0.55
CLDN1-201ENST00000295522 PCDHA5Q9Y5H7 936 aa11.59□□□□□ -0.55
CLDN1-201ENST00000295522 GOLGA8BA8MQT2 603 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 GNAT3A8MTJ3 354 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 FOXN1O15353 648 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 CTDNEP1O95476 244 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 MAP9Q49MG5 647 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 SLF1Q9BQI6 1058 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 SAMSN1Q9NSI8 373 aaKnown RBP11.58□□□□□ -0.56
CLDN1-201ENST00000295522 CDK12Q9NYV4 1490 aaPredicted RBP11.58□□□□□ -0.56
CLDN1-201ENST00000295522 IKBKBO14920 756 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 PIP4K2BP78356 416 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 MYSM1Q5VVJ2 828 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 ANO1Q5XXA6 986 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 CCDC102BQ68D86 513 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 KCTD16Q68DU8 428 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 DHX32Q7L7V1 743 aaKnown RBP11.58□□□□□ -0.56
CLDN1-201ENST00000295522 NOC3LQ8WTT2 800 aaKnown RBP11.58□□□□□ -0.56
CLDN1-201ENST00000295522 CAPS2Q9BXY5 557 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 MAP3K2Q9Y2U5 619 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 U3KPZ7 1027 aaPredicted RBP11.58□□□□□ -0.56
CLDN1-201ENST00000295522 PFKFB2O60825 505 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 SRGAP2O75044 1071 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 RTEL1Q9NZ71 1219 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 DEPDC5O75140 1603 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 MYO3AQ8NEV4 1616 aa11.58□□□□□ -0.56
CLDN1-201ENST00000295522 ATP7BP35670 1465 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 A0A0G2JLW4 131 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 GOLGA6BA6NDN3 693 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 CCT6AP40227 531 aaKnown RBP11.57□□□□□ -0.56
CLDN1-201ENST00000295522 PDE4BQ07343 736 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 E2F5Q15329 346 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 RAD9BQ6WBX8 426 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 ILDR1Q86SU0 546 aaPredicted RBP11.57□□□□□ -0.56
CLDN1-201ENST00000295522 GRAMD1CQ8IYS0 662 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 CABS1Q96KC9 395 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 NUP88Q99567 741 aaPredicted RBP11.57□□□□□ -0.56
CLDN1-201ENST00000295522 HDAC6Q9UBN7 1215 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 A1BGP04217 495 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 NAA25Q14CX7 972 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 KIF13AQ9H1H9 1805 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 NRXN1Q9ULB1 1477 aa11.57□□□□□ -0.56
CLDN1-201ENST00000295522 ABL1P00519 1130 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 RPSAP08865 295 aaKnown RBP11.56□□□□□ -0.56
CLDN1-201ENST00000295522 RBL2Q08999 1139 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 SF3A3Q12874 501 aaKnown RBP eCLIP11.56□□□□□ -0.56
CLDN1-201ENST00000295522 BIRC2Q13490 618 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 POTEDQ86YR6 584 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 ARAP3Q8WWN8 1544 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 SETBP1Q9Y6X0 1596 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 KLF18A0A0U1RQI7 1052 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 A0A1W2PQ27 194 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 A0A1W2PQ64 194 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 A0A1W2PQD8 194 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 TEX33O43247 280 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 PDCLQ13371 301 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 SWT1Q5T5J6 900 aaKnown RBP11.56□□□□□ -0.56
CLDN1-201ENST00000295522 STOX1Q6ZVD7 989 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 CTCFLQ8NI51 663 aaPredicted RBP11.56□□□□□ -0.56
CLDN1-201ENST00000295522 HNRNPLLQ8WVV9 542 aaKnown RBP11.56□□□□□ -0.56
CLDN1-201ENST00000295522 BPIFA3Q9BQP9 254 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 INTS13Q9NVM9 706 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 CARMIL3Q8ND23 1372 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 NEO1Q92859 1461 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 MROH7-TTC4A0A0A0MT08 1334 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 MAP2P11137 1827 aaKnown RBP11.56□□□□□ -0.56
CLDN1-201ENST00000295522 CDC27P30260 824 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 PEX19P40855 299 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 IRAK1P51617 712 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 CLNS1AP54105 237 aaKnown RBP11.56□□□□□ -0.56
CLDN1-201ENST00000295522 KCNV1Q6PIU1 500 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 SND1Q7KZF4 910 aaKnown RBP eCLIP11.56□□□□□ -0.563e-7■■■□□ 18.1
CLDN1-201ENST00000295522 TMEM139Q8IV31 216 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 AIFM3Q96NN9 605 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 ODF2LQ9ULJ1 636 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 MYO6Q9UM54 1294 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 ADGRG1Q9Y653 693 aa11.56□□□□□ -0.56
CLDN1-201ENST00000295522 KIDINS220Q9ULH0 1771 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 INO80Q9ULG1 1556 aaPredicted RBP11.55□□□□□ -0.56
CLDN1-201ENST00000295522 CASP14P31944 242 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 SATB1Q01826 763 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.55□□□□□ -0.56
CLDN1-201ENST00000295522 ANKRD18AQ8IVF6 992 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 JMYQ8N9B5 988 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 KCNB2Q92953 911 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 LLPHQ9BRT6 129 aaKnown RBP11.55□□□□□ -0.56
CLDN1-201ENST00000295522 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.55□□□□□ -0.56
CLDN1-201ENST00000295522 VEZTQ9HBM0 779 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 KIF1CO43896 1103 aaKnown RBP11.55□□□□□ -0.56
CLDN1-201ENST00000295522 SASH1O94885 1247 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 NLRP6P59044 892 aa11.55□□□□□ -0.56
CLDN1-201ENST00000295522 CCDC82Q8N4S0 544 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms