RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 B4E1Z4 1266 aa17.66■□□□□ 0.42
DDX56-201ENST00000258772 PDE6AP16499 860 aa17.66■□□□□ 0.42
DDX56-201ENST00000258772 RXRAP19793 462 aa17.66■□□□□ 0.42
DDX56-201ENST00000258772 CDC27P30260 824 aa17.66■□□□□ 0.42
DDX56-201ENST00000258772 PHKA1P46020 1223 aa17.66■□□□□ 0.42
DDX56-201ENST00000258772 VPS37DQ86XT2 251 aa17.66■□□□□ 0.42
DDX56-201ENST00000258772 XPO4Q9C0E2 1151 aaKnown RBP17.66■□□□□ 0.42
DDX56-201ENST00000258772 SENP2Q9HC62 589 aa17.66■□□□□ 0.42
DDX56-201ENST00000258772 SLAIN2Q9P270 581 aa17.66■□□□□ 0.42
DDX56-201ENST00000258772 ARID4AP29374 1257 aaPredicted RBP17.65■□□□□ 0.42
DDX56-201ENST00000258772 NCAPHQ15003 741 aa17.65■□□□□ 0.42
DDX56-201ENST00000258772 CPLX2Q6PUV4 134 aaKnown RBP17.65■□□□□ 0.42
DDX56-201ENST00000258772 CCAR2Q8N163 923 aaKnown RBP17.65■□□□□ 0.42
DDX56-201ENST00000258772 IGDCC4Q8TDY8 1250 aa17.65■□□□□ 0.42
DDX56-201ENST00000258772 TMEM87BQ96K49 555 aa17.65■□□□□ 0.42
DDX56-201ENST00000258772 TIGD1Q96MW7 591 aa17.65■□□□□ 0.42
DDX56-201ENST00000258772 IFNKQ9P0W0 207 aa17.65■□□□□ 0.42
DDX56-201ENST00000258772 TRMT112Q9UI30 125 aaKnown RBP17.65■□□□□ 0.42
DDX56-201ENST00000258772 TBC1D2BQ9UPU7 963 aa17.65■□□□□ 0.42
DDX56-201ENST00000258772 MROH7-TTC4A0A0A0MT08 1334 aa17.65■□□□□ 0.42
DDX56-201ENST00000258772 TCRBV5S4A2TA0A5A2 114 aa17.65■□□□□ 0.42
DDX56-201ENST00000258772 CBX1P83916 185 aa17.65■□□□□ 0.42
DDX56-201ENST00000258772 PHKBQ93100 1093 aa17.65■□□□□ 0.42
DDX56-201ENST00000258772 STRBPQ96SI9 672 aaKnown RBP17.65■□□□□ 0.42
DDX56-201ENST00000258772 TRMT1Q9NXH9 659 aaKnown RBP17.65■□□□□ 0.42
DDX56-201ENST00000258772 WWC3Q9ULE0 1092 aa17.65■□□□□ 0.42
DDX56-201ENST00000258772 ITGB4P16144 1822 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 PDE8AO60658 829 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 PPP6R2O75170 966 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 SYKP43405 635 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 NTRK3Q16288 839 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 MICU3Q86XE3 530 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 ABCA3Q99758 1704 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 ZBTB43O43298 467 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 SMC2O95347 1197 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 UQCRFS1P1P0C7P4 283 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 PTPAQ15257 358 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 HPSEQ9Y251 543 aa17.64■□□□□ 0.41
DDX56-201ENST00000258772 NUP98P52948 1817 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 CYP19A1P11511 503 aaPredicted RBP17.63■□□□□ 0.41
DDX56-201ENST00000258772 HSPA2P54652 639 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 TPM4P67936 248 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 ALX1Q15699 326 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 JMYQ8N9B5 988 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 AIDAQ96BJ3 306 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 SLC4A9Q96Q91 983 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 FAM217BQ9NTX9 383 aaPredicted RBP17.63■□□□□ 0.41
DDX56-201ENST00000258772 ANKRD36CQ5JPF3 1778 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 IARSP41252 1262 aaKnown RBP17.63■□□□□ 0.41
DDX56-201ENST00000258772 GNL2Q13823 731 aaKnown RBP17.63■□□□□ 0.41
DDX56-201ENST00000258772 NAA30Q147X3 362 aaPredicted RBP17.63■□□□□ 0.41
DDX56-201ENST00000258772 SHC4Q6S5L8 630 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 TMC6Q7Z403 805 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 SGMS1Q86VZ5 419 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 MAP3K14Q99558 947 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 LY9Q9HBG7 655 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 TUBE1Q9UJT0 475 aa17.63■□□□□ 0.41
DDX56-201ENST00000258772 IKBKBO14920 756 aa17.62■□□□□ 0.41
DDX56-201ENST00000258772 U2AF2P26368 475 aaKnown RBP eCLIP17.62■□□□□ 0.411e-6■■■□□ 17.4
DDX56-201ENST00000258772 ARMCX5Q6P1M9 558 aa17.62■□□□□ 0.41
DDX56-201ENST00000258772 NFXL1Q6ZNB6 911 aa17.62■□□□□ 0.41
DDX56-201ENST00000258772 LPIN2Q92539 896 aa17.62■□□□□ 0.41
DDX56-201ENST00000258772 INCENPQ9NQS7 918 aa17.62■□□□□ 0.41
DDX56-201ENST00000258772 FAM237AA0A1B0GTK4 181 aa17.61■□□□□ 0.41
DDX56-201ENST00000258772 PATL2C9JE40 543 aaKnown RBP17.61■□□□□ 0.41
DDX56-201ENST00000258772 FGFR2P21802 821 aa17.61■□□□□ 0.41
DDX56-201ENST00000258772 PUM3Q15397 648 aaKnown RBP17.61■□□□□ 0.41
DDX56-201ENST00000258772 TMEM67Q5HYA8 995 aa17.61■□□□□ 0.41
DDX56-201ENST00000258772 ISM2Q6H9L7 571 aa17.61■□□□□ 0.41
DDX56-201ENST00000258772 CCDC150Q8NCX0 1101 aa17.61■□□□□ 0.41
DDX56-201ENST00000258772 ZBTB1Q9Y2K1 713 aa17.61■□□□□ 0.41
DDX56-201ENST00000258772 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.61■□□□□ 0.41
DDX56-201ENST00000258772 GOLGA8AA7E2F4 631 aa17.61■□□□□ 0.41
DDX56-201ENST00000258772 RANBP6O60518 1105 aaKnown RBP17.61■□□□□ 0.41
DDX56-201ENST00000258772 LIFRP42702 1097 aa17.61■□□□□ 0.41
DDX56-201ENST00000258772 IFNL3Q8IZI9 196 aa17.61■□□□□ 0.41
DDX56-201ENST00000258772 HELBQ8NG08 1087 aaPredicted RBP17.61■□□□□ 0.41
DDX56-201ENST00000258772 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.61■□□□□ 0.41
DDX56-201ENST00000258772 TAOK2Q9UL54 1235 aa17.61■□□□□ 0.41
DDX56-201ENST00000258772 ECM29Q5VYK3 1845 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 TRIM29Q14134 588 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 RESP18Q5W5W9 173 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 MYL10Q9BUA6 226 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.6■□□□□ 0.41
DDX56-201ENST00000258772 HSD3B7Q9H2F3 369 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 PRDM10Q9NQV6 1147 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 ZSWIM5Q9P217 1185 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 UBN2Q6ZU65 1347 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 LRP6O75581 1613 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 CHD4Q14839 1912 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 SPDYE4A6NLX3 237 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 LMOD1P29536 600 aaPredicted RBP17.6■□□□□ 0.41
DDX56-201ENST00000258772 FANCCQ00597 558 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 E4F1Q66K89 784 aaPredicted RBP17.6■□□□□ 0.41
DDX56-201ENST00000258772 SPATA5Q8NB90 893 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 KIF18AQ8NI77 898 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 CLIC6Q96NY7 704 aa17.6■□□□□ 0.41
DDX56-201ENST00000258772 EPB41L4AQ9HCS5 686 aaPredicted RBP17.6■□□□□ 0.41
DDX56-201ENST00000258772 MROH5Q6ZUA9 1318 aa17.59■□□□□ 0.41
DDX56-201ENST00000258772 ERVV-1B6SEH8 477 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms