RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CCL24O00175 119 aa8.23□□□□□ -1.09
SS18-213ENST00000579640 MYCNOSP40205 109 aa8.23□□□□□ -1.09
SS18-213ENST00000579640 IFITM2Q01629 132 aa8.23□□□□□ -1.09
SS18-213ENST00000579640 USF2Q15853 346 aaPredicted RBP8.23□□□□□ -1.09
SS18-213ENST00000579640 NSUN5P1Q3KNT7 163 aa8.23□□□□□ -1.09
SS18-213ENST00000579640 TMEM37Q8WXS4 190 aa8.23□□□□□ -1.09
SS18-213ENST00000579640 RCC1LQ96I51 464 aaKnown RBP8.23□□□□□ -1.09
SS18-213ENST00000579640 METTL26Q96S19 204 aa8.23□□□□□ -1.09
SS18-213ENST00000579640 C20orf24Q9BUV8 137 aa8.23□□□□□ -1.09
SS18-213ENST00000579640 ACTR3CQ9C0K3 210 aaPredicted RBP8.23□□□□□ -1.09
SS18-213ENST00000579640 VSIRQ9H7M9 311 aa8.23□□□□□ -1.09
SS18-213ENST00000579640 PLA2G2EQ9NZK7 142 aa8.23□□□□□ -1.09
SS18-213ENST00000579640 DOK5Q9P104 306 aa8.23□□□□□ -1.09
SS18-213ENST00000579640 UFC1Q9Y3C8 167 aa8.23□□□□□ -1.09
SS18-213ENST00000579640 A0A1W2PPV4 95 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 ZNF320A2RRD8 509 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 A8MWP6 167 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 SEC14L6B5MCN3 397 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 KLF5Q13887 457 aaPredicted RBP8.22□□□□□ -1.09
SS18-213ENST00000579640 GCSAMLQ5JQS6 135 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 FAM78BQ5VT40 261 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 HIST2H2BDQ6DRA6 164 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 UNQ9165/PRO28630Q6UXU0 137 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 PATE2Q6UY27 113 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 NARS2Q96I59 477 aaKnown RBP8.22□□□□□ -1.09
SS18-213ENST00000579640 DAZ1Q9NQZ3 744 aaKnown RBP8.22□□□□□ -1.09
SS18-213ENST00000579640 FUT9Q9Y231 359 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 CTXND1A0A1B0GTU2 59 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 NPPCP23582 126 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 CRYBB3P26998 211 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 CDC34P49427 236 aaPredicted RBP8.22□□□□□ -1.09
SS18-213ENST00000579640 SLURP1P55000 103 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 FAM74A1Q5RGS3 127 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 FAM122CQ6P4D5 195 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 SHISA2Q6UWI4 295 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 LINC00305Q7Z4B0 112 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 RPP25LQ8N5L8 163 aaKnown RBP8.22□□□□□ -1.09
SS18-213ENST00000579640 C3orf56Q8N813 242 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 OR4F17Q8NGA8 305 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 FAM213BQ8TBF2 198 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 SAT2Q96F10 170 aaPredicted RBP8.22□□□□□ -1.09
SS18-213ENST00000579640 OR4F4Q96R69 305 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 PEMTQ9UBM1 199 aa8.22□□□□□ -1.09
SS18-213ENST00000579640 ZNF705EA8MWA4 302 aaPredicted RBP8.21□□□□□ -1.1
SS18-213ENST00000579640 H3BRN7 92 aa8.21□□□□□ -1.1
SS18-213ENST00000579640 RGS13O14921 159 aa8.21□□□□□ -1.1
SS18-213ENST00000579640 BMI1P35226 326 aa8.21□□□□□ -1.1
SS18-213ENST00000579640 SYNJ2BPP57105 145 aa8.21□□□□□ -1.1
SS18-213ENST00000579640 TAS2R45P59539 299 aa8.21□□□□□ -1.1
SS18-213ENST00000579640 BLOC1S1P78537 153 aa8.21□□□□□ -1.1
SS18-213ENST00000579640 SHANK2-AS3Q9BTD1 123 aa8.21□□□□□ -1.1
SS18-213ENST00000579640 SLC25A39Q9BZJ4 359 aaPredicted RBP8.21□□□□□ -1.1
SS18-213ENST00000579640 SEPSECSQ9HD40 501 aaKnown RBP8.21□□□□□ -1.1
SS18-213ENST00000579640 IGHV3OR16-8A0A075B7F1 116 aa8.2□□□□□ -1.1
SS18-213ENST00000579640 A0A1W2PS18 150 aa8.2□□□□□ -1.1
SS18-213ENST00000579640 C8orf88P0DMB2 117 aa8.2□□□□□ -1.1
SS18-213ENST00000579640 RAB24Q969Q5 203 aa8.2□□□□□ -1.1
SS18-213ENST00000579640 MARC2Q969Z3 335 aa8.2□□□□□ -1.1
SS18-213ENST00000579640 DUX3Q96PT4 197 aa8.2□□□□□ -1.1
SS18-213ENST00000579640 UHRF2Q96PU4 802 aa8.2□□□□□ -1.1
SS18-213ENST00000579640 TMEM231Q9H6L2 316 aa8.2□□□□□ -1.1
SS18-213ENST00000579640 SLC25A22Q9H936 323 aa8.2□□□□□ -1.1
SS18-213ENST00000579640 TECRQ9NZ01 308 aaKnown RBP8.2□□□□□ -1.1
SS18-213ENST00000579640 U3KQE9 123 aa8.2□□□□□ -1.1
SS18-213ENST00000579640 IGHV7-4-1A0A0J9YVY3 117 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 ZNF98A6NK75 572 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 TEX46H3BTG2 121 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 H2AFB1P0C5Y9 115 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 FHITP49789 147 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 RAB14P61106 215 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 KHDC3LQ587J8 217 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 C1orf194Q5T5A4 169 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 MIR17HGQ75NE6 70 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 STXBP6Q8NFX7 210 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 OR9G4Q8NGQ1 327 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 MBD3L1Q8WWY6 194 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 DLX4Q92988 240 aaPredicted RBP8.19□□□□□ -1.1
SS18-213ENST00000579640 GRAMD2BQ96HH9 432 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 TMEM213A2RRL7 107 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 ZNF207O43670 478 aaKnown RBP8.19□□□□□ -1.1
SS18-213ENST00000579640 BUB3O43684 328 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 HBE1P02100 147 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 PF4P02776 101 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 STAG3L2P0CL84 134 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 STAG3L3P0CL85 134 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 ZNF726P1Q15940 193 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 TM4SF20Q53R12 229 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 SPATA31B1PQ5VZV4 182 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 PQLC2Q6ZP29 291 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 GPR82Q96P67 336 aa8.19□□□□□ -1.1
SS18-213ENST00000579640 TRAV1-1A0A0B4J248 108 aa8.18□□□□□ -1.1
SS18-213ENST00000579640 MAP1LC3B2A6NCE7 125 aa8.18□□□□□ -1.1
SS18-213ENST00000579640 C2orf70A6NJV1 201 aa8.18□□□□□ -1.1
SS18-213ENST00000579640 M0QZ24 198 aa8.18□□□□□ -1.1
SS18-213ENST00000579640 OVOL1O14753 267 aa8.18□□□□□ -1.1
SS18-213ENST00000579640 SFT2D1Q8WV19 159 aa8.18□□□□□ -1.1
SS18-213ENST00000579640 SCRT1Q9BWW7 348 aa8.18□□□□□ -1.1
SS18-213ENST00000579640 MAP1LC3BQ9GZQ8 125 aa8.18□□□□□ -1.1
SS18-213ENST00000579640 SMPXQ9UHP9 88 aa8.18□□□□□ -1.1
SS18-213ENST00000579640 COL6A5A8TX70 2615 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms