RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 WFDC12Q8WWY7 111 aa10.55□□□□□ -0.72
CCDC40-209ENST00000573474 ZNF414Q96IQ9 312 aa10.55□□□□□ -0.72
CCDC40-209ENST00000573474 UHRF2Q96PU4 802 aa10.55□□□□□ -0.72
CCDC40-209ENST00000573474 OR5B12Q96R08 314 aa10.55□□□□□ -0.72
CCDC40-209ENST00000573474 NDUFA4O00483 81 aa10.54□□□□□ -0.72
CCDC40-209ENST00000573474 ARL14EPLP0DKL9 152 aa10.54□□□□□ -0.72
CCDC40-209ENST00000573474 USF2Q15853 346 aaPredicted RBP10.54□□□□□ -0.72
CCDC40-209ENST00000573474 TCTEX1D4Q5JR98 221 aa10.54□□□□□ -0.72
CCDC40-209ENST00000573474 PQLC2Q6ZP29 291 aa10.54□□□□□ -0.72
CCDC40-209ENST00000573474 SLC25A39Q9BZJ4 359 aaPredicted RBP10.54□□□□□ -0.72
CCDC40-209ENST00000573474 ZFAND3Q9H8U3 227 aa10.54□□□□□ -0.72
CCDC40-209ENST00000573474 RABAC1Q9UI14 185 aa10.54□□□□□ -0.72
CCDC40-209ENST00000573474 RNF114Q9Y508 228 aa10.54□□□□□ -0.72
CCDC40-209ENST00000573474 TRAV5A0A0B4J249 113 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 GCHFRP30047 84 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 PSMB3P49720 205 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 PPT1P50897 306 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 SRSF2Q01130 221 aaKnown RBP10.53□□□□□ -0.72
CCDC40-209ENST00000573474 MORN5Q5VZ52 161 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 EIF4E3Q8N5X7 224 aaKnown RBP10.53□□□□□ -0.72
CCDC40-209ENST00000573474 STXBP6Q8NFX7 210 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 FAM167A-AS1Q96KT0 104 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 FAM210AQ96ND0 272 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 SHANK2-AS3Q9BTD1 123 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 SLC25A2Q9BXI2 301 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 TMPRSS5Q9H3S3 457 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 RNF24Q9Y225 148 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 NF1P21359 2839 aa10.53□□□□□ -0.72
CCDC40-209ENST00000573474 A0A1B0GUS0 222 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 H3BRN7 92 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 I3L521 148 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 HAX1O00165 279 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 OR7C2O60412 319 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 IFNA1P01562 189 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 HSPB1P04792 205 aaKnown RBP10.52□□□□□ -0.73
CCDC40-209ENST00000573474 PROK1P58294 105 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 GUK1Q16774 197 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 FAM106AQ4KMX7 169 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 UQCC3Q6UW78 93 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 GPHB5Q86YW7 130 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 IQCF2Q8IXL9 164 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 C4orf3Q8WVX3 66 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 TMEM167BQ9NRX6 74 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 GNG13Q9P2W3 67 aa10.52□□□□□ -0.73
CCDC40-209ENST00000573474 RBFOX3A6NFN3 312 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 ZNF98A6NK75 572 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 CD28P10747 220 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 TAGLN2P37802 199 aaKnown RBP10.51□□□□□ -0.73
CCDC40-209ENST00000573474 PEA15Q15121 130 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 KHDC1LQ5JSQ8 128 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 ZNF503Q96F45 646 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 CITED4Q96RK1 184 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 METTL26Q96S19 204 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 PAXXQ9BUH6 204 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 C20orf24Q9BUV8 137 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 SCRT1Q9BWW7 348 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 EIF5A2Q9GZV4 153 aaKnown RBP10.51□□□□□ -0.73
CCDC40-209ENST00000573474 OR51M1Q9H341 326 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 MANBALQ9NQG1 85 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 CUBNO60494 3623 aa10.51□□□□□ -0.73
CCDC40-209ENST00000573474 IGHV3OR16-8A0A075B7F1 116 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 CD5P06127 495 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 NPPCP23582 126 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 CRYBB3P26998 211 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 HAGHQ16775 308 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 RPEL1Q2QD12 228 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 TOR2AQ5JU69 321 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 ZNF506Q5JVG8 444 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 LEMD1Q68G75 181 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 SUN5Q8TC36 379 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 TMEM190Q8WZ59 177 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 TMEM14CQ9P0S9 112 aa10.5□□□□□ -0.73
CCDC40-209ENST00000573474 TSSC4Q9Y5U2 329 aaPredicted RBP10.5□□□□□ -0.73
CCDC40-209ENST00000573474 IGHV4OR15-8A0A075B7B6 117 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 A0A087WW49 117 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 LOC102723971A0A1B0GUV8 181 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 ZNF320A2RRD8 509 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 BCL2P10415 239 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 ZP3P21754 424 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 UBE2L3P68036 154 aaKnown RBP10.49□□□□□ -0.73
CCDC40-209ENST00000573474 SRSF3P84103 164 aaKnown RBP10.49□□□□□ -0.73
CCDC40-209ENST00000573474 UNQ9165/PRO28630Q6UXU0 137 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 C18orf65Q6ZTR6 163 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 BPIFA4PQ86YQ2 179 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 KLHL30-AS1Q8NEE0 82 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 RARRES2Q99969 163 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 SMDT1Q9H4I9 107 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 TREM1Q9NP99 234 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 VAX2Q9UIW0 290 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 U3KQE9 123 aa10.49□□□□□ -0.73
CCDC40-209ENST00000573474 LINC01619G3V211 115 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 K7EMT4 169 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 ZNF207O43670 478 aaKnown RBP10.48□□□□□ -0.73
CCDC40-209ENST00000573474 PAGE4O60829 102 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 OR10J4P0C629 311 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 PYYP10082 97 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 GP9P14770 177 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 FOXL1Q12952 345 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 ICAM4Q14773 271 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 C1orf194Q5T5A4 169 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms