RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 GATA2P23769 480 aaPredicted RBP7.81□□□□□ -1.16
VPS39-208ENST00000564994 HLA-DMBP28068 263 aa7.81□□□□□ -1.16
VPS39-208ENST00000564994 POLR2GP62487 172 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS39-208ENST00000564994 SPANXN5Q5MJ07 72 aa7.81□□□□□ -1.16
VPS39-208ENST00000564994 C1orf194Q5T5A4 169 aa7.81□□□□□ -1.16
VPS39-208ENST00000564994 OR4D5Q8NGN0 318 aa7.81□□□□□ -1.16
VPS39-208ENST00000564994 C2CD4CQ8TF44 421 aa7.81□□□□□ -1.16
VPS39-208ENST00000564994 C17orf77Q96MU5 243 aa7.81□□□□□ -1.16
VPS39-208ENST00000564994 LINC00052Q96N35 136 aa7.81□□□□□ -1.16
VPS39-208ENST00000564994 CELA1Q9UNI1 258 aa7.81□□□□□ -1.16
VPS39-208ENST00000564994 PMS2P5A8MQ11 134 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 IGKV3-20P01619 116 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 OR4E1P0C645 316 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 ANXA7P20073 488 aaKnown RBP7.8□□□□□ -1.16
VPS39-208ENST00000564994 INPP1P49441 399 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 RPP30P78346 268 aaKnown RBP7.8□□□□□ -1.16
VPS39-208ENST00000564994 PRR20EP86478 221 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 PRR20CP86479 221 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 PRR20DP86480 221 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 PRR20BP86481 221 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 PRR20AP86496 221 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 TRIQKQ629K1 86 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 Q6ZTC4 211 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 ACOT7LQ6ZUV0 252 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 OR8I2Q8N0Y5 310 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 PPP1R14BQ96C90 147 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 SLC25A32Q9H2D1 315 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 SAV1Q9H4B6 383 aaPredicted RBP7.8□□□□□ -1.16
VPS39-208ENST00000564994 PFDN2Q9UHV9 154 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 APLNQ9ULZ1 77 aa7.8□□□□□ -1.16
VPS39-208ENST00000564994 STRAPQ9Y3F4 350 aaKnown RBP7.8□□□□□ -1.16
VPS39-208ENST00000564994 IGLL5B9A064 214 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 F6UB75 175 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 CCNKO75909 580 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 IL7P13232 177 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 PSMB3P49720 205 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 PAX9P55771 341 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 FXYD7P58549 80 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 NUTF2P61970 127 aaKnown RBP7.79□□□□□ -1.16
VPS39-208ENST00000564994 ZNF705AQ6ZN79 300 aaPredicted RBP7.79□□□□□ -1.16
VPS39-208ENST00000564994 FOXI2Q6ZQN5 318 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 ZNF767PQ75MW2 155 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 ZNF709Q8N972 641 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 C20orf173Q96LM9 149 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 C1QTNF4Q9BXJ3 329 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 DNAH17Q9UFH2 4485 aa7.79□□□□□ -1.16
VPS39-208ENST00000564994 ZNF98A6NK75 572 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 ZNF705FA8MVS1 300 aaPredicted RBP7.78□□□□□ -1.16
VPS39-208ENST00000564994 C11orf94C9JXX5 98 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 ISLRO14498 428 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 CFDP00746 253 aaPredicted RBP7.78□□□□□ -1.16
VPS39-208ENST00000564994 ZNF705DP0CH99 300 aaPredicted RBP7.78□□□□□ -1.16
VPS39-208ENST00000564994 ZNF705BP0CI00 300 aaPredicted RBP7.78□□□□□ -1.16
VPS39-208ENST00000564994 ORM2P19652 201 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 ID1P41134 155 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 AKR1C1Q04828 323 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 C12orf74Q32Q52 190 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 TMEM144Q7Z5S9 345 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 COQ8AQ8NI60 647 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 CLUHP3Q96NS8 147 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 SLC35B3Q9H1N7 401 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 SLC25A22Q9H936 323 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 PSENENQ9NZ42 101 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 SLC45A2Q9UMX9 530 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 FAT2Q9NYQ8 4349 aa7.78□□□□□ -1.16
VPS39-208ENST00000564994 TRAV10A0A0B4J240 114 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 A0A0J9YX75 114 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 PLA2G10O15496 165 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 SSSCA1O60232 199 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 IFNA21P01568 189 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 TCTAP57738 103 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 C4orf46Q504U0 113 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 TMEM14EPQ6UXP3 125 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 CYP2G1PQ6ZSU1 146 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 BPIFCQ8NFQ6 507 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 OR4B1Q8NGF8 309 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 OR1B1Q8NGR6 318 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 SMIM8Q96KF7 97 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 NEU1Q99519 415 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 C7orf50Q9BRJ6 194 aaKnown RBP7.77□□□□□ -1.17
VPS39-208ENST00000564994 RSG1Q9BU20 258 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 SCRT1Q9BWW7 348 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 HECTD4Q9Y4D8 3996 aa7.77□□□□□ -1.17
VPS39-208ENST00000564994 TRAV8-2A0A0B4J237 113 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 SMCO3A2RU48 225 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 CENPXA8MT69 81 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 H3BRN7 92 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 SCGB1D2O95969 90 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 METTL15P1P0C7V9 234 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 GALR1P47211 349 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 IAH1Q2TAA2 248 aaPredicted RBP7.76□□□□□ -1.17
VPS39-208ENST00000564994 FAM78BQ5VT40 261 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 ZBTB8BQ8NAP8 495 aaPredicted RBP7.76□□□□□ -1.17
VPS39-208ENST00000564994 MITD1Q8WV92 249 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 C16orf92Q96LL3 132 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 TMEM147Q9BVK8 224 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 DOK5Q9P104 306 aa7.76□□□□□ -1.17
VPS39-208ENST00000564994 RCL1Q9Y2P8 373 aaKnown RBP7.76□□□□□ -1.17
VPS39-208ENST00000564994 IGHV4-4A0A075B6R2 117 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms