RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 C11orf1Q9H5F2 150 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 NPVFQ9HCQ7 196 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 UQCC1Q9NVA1 299 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 ZNRD1Q9P1U0 126 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 MOB4Q9Y3A3 225 aa4.02□□□□□ -1.77
LDLR-209ENST00000558528 A0A1W2PS18 150 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 SMCO3A2RU48 225 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 SNURFLB1AK76 121 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 CD5LO43866 347 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 CIDEAO60543 219 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 HLA-DRB1P01911 266 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 FABP1P07148 127 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 METTL15P1P0C7V9 234 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 DEFA4P12838 97 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 SRP14P37108 136 aaKnown RBP4.01□□□□□ -1.77
LDLR-209ENST00000558528 SLC38A11Q08AI6 406 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 FXYD3Q14802 87 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 IZUMO4Q1ZYL8 232 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 ODF3L2Q3SX64 289 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 MORN5Q5VZ52 161 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 RNASEKQ6P5S7 137 aaKnown RBP4.01□□□□□ -1.77
LDLR-209ENST00000558528 DPPA3Q6W0C5 159 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 Q6ZVQ6 151 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 Q8N6K4 173 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 ZNF680Q8NEM1 530 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 OR1P1Q8NH06 330 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 SRSF12Q8WXF0 261 aaKnown RBP4.01□□□□□ -1.77
LDLR-209ENST00000558528 SLC35E1Q96K37 410 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 GINS3Q9BRX5 216 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 FBXL15Q9H469 300 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 FNDC4Q9H6D8 234 aaPredicted RBP4.01□□□□□ -1.77
LDLR-209ENST00000558528 ZNF430Q9H8G1 570 aaPredicted RBP4.01□□□□□ -1.77
LDLR-209ENST00000558528 RNF24Q9Y225 148 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 TIMM9Q9Y5J7 89 aa4.01□□□□□ -1.77
LDLR-209ENST00000558528 RAI1Q7Z5J4 1906 aaPredicted RBP4.01□□□□□ -1.77
LDLR-209ENST00000558528 PRR14LQ5THK1 2151 aa4□□□□□ -1.77
LDLR-209ENST00000558528 TANC2Q9HCD6 1990 aa4□□□□□ -1.77
LDLR-209ENST00000558528 TRAV30A0A087WSZ9 112 aa4□□□□□ -1.77
LDLR-209ENST00000558528 TRAV3A0A0B4J244 114 aa4□□□□□ -1.77
LDLR-209ENST00000558528 IGSF23A1L1A6 192 aa4□□□□□ -1.77
LDLR-209ENST00000558528 MSGN1A6NI15 193 aa4□□□□□ -1.77
LDLR-209ENST00000558528 CST7O76096 145 aa4□□□□□ -1.77
LDLR-209ENST00000558528 TMEM50AO95807 157 aa4□□□□□ -1.77
LDLR-209ENST00000558528 MT-CO2P00403 227 aa4□□□□□ -1.77
LDLR-209ENST00000558528 CFDP00746 253 aaPredicted RBP4□□□□□ -1.77
LDLR-209ENST00000558528 CA2P00918 260 aa4□□□□□ -1.77
LDLR-209ENST00000558528 CRYGCP07315 174 aa4□□□□□ -1.77
LDLR-209ENST00000558528 OR13C7P0DN81 318 aa4□□□□□ -1.77
LDLR-209ENST00000558528 IGHV4-38-2P0DP08 117 aa4□□□□□ -1.77
LDLR-209ENST00000558528 DLX1P56177 255 aa4□□□□□ -1.77
LDLR-209ENST00000558528 GNB1P62873 340 aa4□□□□□ -1.77
LDLR-209ENST00000558528 RIGQ13278 110 aa4□□□□□ -1.77
LDLR-209ENST00000558528 CLINT1Q14677 625 aa4□□□□□ -1.77
LDLR-209ENST00000558528 BSXQ3C1V8 233 aa4□□□□□ -1.77
LDLR-209ENST00000558528 CLLU1Q5K131 121 aa4□□□□□ -1.77
LDLR-209ENST00000558528 AKR1C8PQ5T2L2 129 aa4□□□□□ -1.77
LDLR-209ENST00000558528 OR8G2PQ6IF36 304 aa4□□□□□ -1.77
LDLR-209ENST00000558528 TMEM144Q7Z5S9 345 aa4□□□□□ -1.77
LDLR-209ENST00000558528 TTC9CQ8N5M4 171 aa4□□□□□ -1.77
LDLR-209ENST00000558528 Q8N9W7 124 aa4□□□□□ -1.77
LDLR-209ENST00000558528 ARPC1AQ92747 370 aa4□□□□□ -1.77
LDLR-209ENST00000558528 DLX4Q92988 240 aaPredicted RBP4□□□□□ -1.77
LDLR-209ENST00000558528 PSMG3Q9BT73 122 aaPredicted RBP4□□□□□ -1.77
LDLR-209ENST00000558528 C19orf24Q9BVV8 132 aa4□□□□□ -1.77
LDLR-209ENST00000558528 SMIM3Q9BZL3 60 aa4□□□□□ -1.77
LDLR-209ENST00000558528 ARV1Q9H2C2 271 aa4□□□□□ -1.77
LDLR-209ENST00000558528 GEMIN7Q9H840 131 aaKnown RBP4□□□□□ -1.77
LDLR-209ENST00000558528 CYTL1Q9NRR1 136 aa4□□□□□ -1.77
LDLR-209ENST00000558528 PLSCR3Q9NRY6 295 aa4□□□□□ -1.77
LDLR-209ENST00000558528 ZNF580Q9UK33 172 aa4□□□□□ -1.77
LDLR-209ENST00000558528 ARFGEF3Q5TH69 2177 aa4□□□□□ -1.77
LDLR-209ENST00000558528 A6NDX4 124 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 PMS2P5A8MQ11 134 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 H3BP45 60 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 H3BUA1 57 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 H3BUX3 64 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 BRI3O95415 125 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 FSHBP01225 129 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 IGHV4-59P01825 116 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 HBE1P02100 147 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 PRH1P02810 166 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 RNASE2P10153 161 aaKnown RBP3.99□□□□□ -1.77
LDLR-209ENST00000558528 CTRB1P17538 263 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 RPL35AP18077 110 aaKnown RBP3.99□□□□□ -1.77
LDLR-209ENST00000558528 SULT1A2P50226 295 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 SELENOTP62341 195 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 IFITM2Q01629 132 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 PRB3Q04118 309 aaPredicted RBP3.99□□□□□ -1.77
LDLR-209ENST00000558528 ACOT6Q3I5F7 207 aaPredicted RBP3.99□□□□□ -1.77
LDLR-209ENST00000558528 KRTAP24-1Q3LI83 254 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 AKIRIN2Q53H80 203 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 KLF17Q5JT82 389 aaPredicted RBP3.99□□□□□ -1.77
LDLR-209ENST00000558528 LDLRAD2Q5SZI1 272 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 RUSC1-AS1Q66K80 236 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 RPL7L1Q6DKI1 246 aaKnown RBP3.99□□□□□ -1.77
LDLR-209ENST00000558528 PVRIGQ6DKI7 326 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 CTRB2Q6GPI1 263 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 KCNIP4Q6PIL6 250 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 ATRAIDQ6UW56 229 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 BRD3OSQ6XYD6 125 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms