RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 PTPRZ1P23471 2315 aaPredicted RBP14.38□□□□□ -0.11
SYNE3-204ENST00000555759 IGHV3OR16-12A0A075B7B8 117 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 S100A7L2Q5SY68 101 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 Q6P435 159 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 EXOC3-AS1Q8N2X6 119 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 GREB1Q4ZG55 1949 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 SRRM5B3KS81 715 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 BVES-AS1Q5T3Y7 98 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 V9GYV3 84 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 BRCA1P38398 1863 aaKnown RBP14.38□□□□□ -0.11
SYNE3-204ENST00000555759 A0A1W2PPM0 123 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 OVOL1O14753 267 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 CLPSP04118 112 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 CD28P10747 220 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 C17orf100A8MU93 164 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 PSPNO60542 156 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 IGKV3OR2-268A0A0C4DH90 116 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 SIVA1O15304 175 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 NKX2-8O15522 239 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 SH2D1AO60880 128 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 SLAQ13239 276 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 Q86TA4 180 aa14.38□□□□□ -0.11
SYNE3-204ENST00000555759 TP53BP1Q12888 1972 aaPredicted RBP14.38□□□□□ -0.11
SYNE3-204ENST00000555759 MYOFQ9NZM1 2061 aa14.37□□□□□ -0.11
SYNE3-204ENST00000555759 LINC00473A8K010 186 aa14.37□□□□□ -0.11
SYNE3-204ENST00000555759 LGALS9BQ3B8N2 356 aa14.37□□□□□ -0.11
SYNE3-204ENST00000555759 LGALS9CQ6DKI2 356 aa14.37□□□□□ -0.11
SYNE3-204ENST00000555759 FAM57AQ8TBR7 257 aa14.37□□□□□ -0.11
SYNE3-204ENST00000555759 SMIM27A0A1W2PRY6 76 aa14.37□□□□□ -0.11
SYNE3-204ENST00000555759 CD7P09564 240 aa14.37□□□□□ -0.11
SYNE3-204ENST00000555759 TRAV3A0A0B4J244 114 aa14.37□□□□□ -0.11
SYNE3-204ENST00000555759 IGHV1-24A0A0C4DH33 117 aa14.37□□□□□ -0.11
SYNE3-204ENST00000555759 IGKV3-20P01619 116 aa14.37□□□□□ -0.11
SYNE3-204ENST00000555759 OVOL2Q9BRP0 275 aa14.37□□□□□ -0.11
SYNE3-204ENST00000555759 TPRP12270 2363 aaKnown RBP14.37□□□□□ -0.11
SYNE3-204ENST00000555759 C5orf63A6NC05 138 aa14.36□□□□□ -0.11
SYNE3-204ENST00000555759 SCRT1Q9BWW7 348 aa14.36□□□□□ -0.11
SYNE3-204ENST00000555759 C1orf147Q96MC9 270 aaPredicted RBP14.36□□□□□ -0.11
SYNE3-204ENST00000555759 MCRIP2Q9BUT9 160 aaKnown RBP14.36□□□□□ -0.11
SYNE3-204ENST00000555759 IGLC7A0M8Q6 106 aa14.36□□□□□ -0.11
SYNE3-204ENST00000555759 CDPF1Q6NVV7 123 aa14.36□□□□□ -0.11
SYNE3-204ENST00000555759 C9JAW5 83 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 VDAC2P45880 294 aaPredicted RBP14.35□□□□□ -0.11
SYNE3-204ENST00000555759 TAL2Q16559 108 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 CLEC2AQ6UVW9 174 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 SP9P0CG40 484 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 ETDBQ3ZM63 59 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 PYGO2Q9BRQ0 406 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 TOMM7Q9P0U1 55 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 FAM186AA6NE01 2351 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 CSRP2Q16527 193 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 AMN1Q8IY45 258 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 DPH3P1Q9H4G8 78 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 DUX3Q96PT4 197 aa14.35□□□□□ -0.11
SYNE3-204ENST00000555759 MBNL3Q9NUK0 354 aaKnown RBP14.35□□□□□ -0.11
SYNE3-204ENST00000555759 IGKV2-40A0A087WW87 121 aaPredicted RBP14.34□□□□□ -0.11
SYNE3-204ENST00000555759 IGKV2D-40P01614 121 aaPredicted RBP14.34□□□□□ -0.11
SYNE3-204ENST00000555759 PDLIM4P50479 330 aa14.34□□□□□ -0.11
SYNE3-204ENST00000555759 FXYD7P58549 80 aa14.34□□□□□ -0.11
SYNE3-204ENST00000555759 IGHV2-70DA0A0C4DH43 119 aa14.34□□□□□ -0.11
SYNE3-204ENST00000555759 C11orf52Q96A22 123 aa14.34□□□□□ -0.11
SYNE3-204ENST00000555759 RNF5Q99942 180 aa14.34□□□□□ -0.11
SYNE3-204ENST00000555759 AZU1P20160 251 aa14.34□□□□□ -0.11
SYNE3-204ENST00000555759 C9orf153Q5TBE3 101 aa14.34□□□□□ -0.11
SYNE3-204ENST00000555759 NPFFR1Q9GZQ6 430 aa14.34□□□□□ -0.11
SYNE3-204ENST00000555759 EDA2RQ9HAV5 297 aa14.34□□□□□ -0.11
SYNE3-204ENST00000555759 ZNF581Q9P0T4 197 aa14.34□□□□□ -0.11
SYNE3-204ENST00000555759 IGHV3OR16-8A0A075B7F1 116 aa14.33□□□□□ -0.12
SYNE3-204ENST00000555759 VCYO14598 125 aa14.33□□□□□ -0.12
SYNE3-204ENST00000555759 RNASE2P10153 161 aaKnown RBP14.33□□□□□ -0.12
SYNE3-204ENST00000555759 RPL15P61313 204 aaKnown RBP14.33□□□□□ -0.12
SYNE3-204ENST00000555759 POLR2AP24928 1970 aaKnown RBP14.33□□□□□ -0.12
SYNE3-204ENST00000555759 SLC25A20O43772 301 aa14.33□□□□□ -0.12
SYNE3-204ENST00000555759 VWCEQ96DN2 955 aa14.33□□□□□ -0.12
SYNE3-204ENST00000555759 SIP14410 1827 aa14.33□□□□□ -0.12
SYNE3-204ENST00000555759 DUSP14O95147 198 aaKnown RBP14.33□□□□□ -0.12
SYNE3-204ENST00000555759 TFF1P04155 84 aa14.32□□□□□ -0.12
SYNE3-204ENST00000555759 PRR31Q5SQ13 230 aa14.32□□□□□ -0.12
SYNE3-204ENST00000555759 GGNQ86UU5 652 aa14.32□□□□□ -0.12
SYNE3-204ENST00000555759 TRGV11A0A075B6L2 103 aa14.32□□□□□ -0.12
SYNE3-204ENST00000555759 ARMS2P0C7Q2 107 aa14.32□□□□□ -0.12
SYNE3-204ENST00000555759 CYYR1Q96J86 154 aa14.32□□□□□ -0.12
SYNE3-204ENST00000555759 SPANXCQ9NY87 97 aa14.32□□□□□ -0.12
SYNE3-204ENST00000555759 KLHDC3Q9BQ90 382 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 NEGR1Q7Z3B1 354 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 C5orf24Q7Z6I8 188 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 DEFB125Q8N687 156 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 IGKV1-6A0A0C4DH72 117 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 HAX1O00165 279 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 CCL25O15444 150 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 PDE6HQ13956 83 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 C10orf55Q5SWW7 151 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 TRAV40A0A0B4J280 105 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 FAM104BQ5XKR9 115 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 MPDZO75970 2070 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 H3BMM0 161 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 TMEM75Q8N9X5 138 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 UBE2WQ96B02 151 aa14.31□□□□□ -0.12
SYNE3-204ENST00000555759 IFITM1P13164 125 aa14.3□□□□□ -0.12
SYNE3-204ENST00000555759 LINC00479Q96M42 142 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms