RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 RITA1Q96K30 269 aa14.04□□□□□ -0.16
SYNE3-202ENST00000553340 COLQQ9Y215 455 aaPredicted RBP14.04□□□□□ -0.16
SYNE3-202ENST00000553340 ENSAO43768 121 aaKnown RBP14.03□□□□□ -0.16
SYNE3-202ENST00000553340 C12orf54Q6X4T0 127 aa14.03□□□□□ -0.16
SYNE3-202ENST00000553340 PPIAL4EA0A075B759 164 aa14.03□□□□□ -0.16
SYNE3-202ENST00000553340 C17orf100A8MU93 164 aa14.03□□□□□ -0.16
SYNE3-202ENST00000553340 PPIAL4DF5H284 164 aa14.03□□□□□ -0.16
SYNE3-202ENST00000553340 NDUFB3O43676 98 aa14.03□□□□□ -0.16
SYNE3-202ENST00000553340 PPIAL4FP0DN26 164 aa14.03□□□□□ -0.16
SYNE3-202ENST00000553340 PLP1P60201 277 aa14.03□□□□□ -0.16
SYNE3-202ENST00000553340 MRGPRG-AS1Q2M3A8 158 aa14.03□□□□□ -0.16
SYNE3-202ENST00000553340 BVES-AS1Q5T3Y7 98 aa14.03□□□□□ -0.16
SYNE3-202ENST00000553340 Q86TA4 180 aa14.03□□□□□ -0.16
SYNE3-202ENST00000553340 HSPB8Q9UJY1 196 aa14.03□□□□□ -0.16
SYNE3-202ENST00000553340 HAX1O00165 279 aa14.02□□□□□ -0.16
SYNE3-202ENST00000553340 CDKN1BP46527 198 aa14.02□□□□□ -0.16
SYNE3-202ENST00000553340 GSX1Q9H4S2 264 aaPredicted RBP14.02□□□□□ -0.16
SYNE3-202ENST00000553340 OTORQ9NRC9 128 aa14.02□□□□□ -0.16
SYNE3-202ENST00000553340 PLXNB1O43157 2135 aa14.02□□□□□ -0.17
SYNE3-202ENST00000553340 RPL27AP46776 148 aaKnown RBP14.02□□□□□ -0.17
SYNE3-202ENST00000553340 HIGD1AQ9Y241 93 aa14.02□□□□□ -0.17
SYNE3-202ENST00000553340 IGHV3-21A0A0B4J1V1 117 aa14.01□□□□□ -0.17
SYNE3-202ENST00000553340 TAX1BP3O14907 124 aa14.01□□□□□ -0.17
SYNE3-202ENST00000553340 ZNF138P52744 262 aa14.01□□□□□ -0.17
SYNE3-202ENST00000553340 CIARTQ8N365 385 aaPredicted RBP14.01□□□□□ -0.17
SYNE3-202ENST00000553340 TEX45Q8NA69 505 aa14.01□□□□□ -0.17
SYNE3-202ENST00000553340 MS4A6AQ9H2W1 248 aa14.01□□□□□ -0.17
SYNE3-202ENST00000553340 SCRT2Q9NQ03 307 aa14.01□□□□□ -0.17
SYNE3-202ENST00000553340 TRAV8-1A0A0A6YYK1 113 aa14.01□□□□□ -0.17
SYNE3-202ENST00000553340 HTR1DP28221 377 aa14.01□□□□□ -0.17
SYNE3-202ENST00000553340 TMEM108Q6UXF1 575 aa14.01□□□□□ -0.17
SYNE3-202ENST00000553340 APOHP02749 345 aaPredicted RBP14□□□□□ -0.17
SYNE3-202ENST00000553340 APELAP0DMC3 54 aa14□□□□□ -0.17
SYNE3-202ENST00000553340 RHOGP84095 191 aa14□□□□□ -0.17
SYNE3-202ENST00000553340 DEFB125Q8N687 156 aa14□□□□□ -0.17
SYNE3-202ENST00000553340 IGHV3-72A0A0B4J1Y9 119 aa14□□□□□ -0.17
SYNE3-202ENST00000553340 TMEM178BH3BS89 294 aa14□□□□□ -0.17
SYNE3-202ENST00000553340 M0R296 226 aa14□□□□□ -0.17
SYNE3-202ENST00000553340 PRNTQ86SH4 94 aa14□□□□□ -0.17
SYNE3-202ENST00000553340 TMUB1Q9BVT8 246 aa14□□□□□ -0.17
SYNE3-202ENST00000553340 H0Y8G0 127 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 HLA-DRB1P01911 266 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 CEACAM8P31997 349 aaPredicted RBP13.99□□□□□ -0.17
SYNE3-202ENST00000553340 LYPD2Q6UXB3 125 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 SPENQ96T58 3664 aaKnown RBP13.99□□□□□ -0.17
SYNE3-202ENST00000553340 MUC21A0A0G2JKD1 596 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 MUC21A0A140T8X8 626 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 CEACAM4O75871 244 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 LYZP61626 148 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 ADIPOQQ15848 244 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 MUC21Q5SSG8 566 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 GOLT1AQ6ZVE7 132 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 ERASQ7Z444 233 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 CCL17Q92583 94 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 TMEM14CQ9P0S9 112 aa13.99□□□□□ -0.17
SYNE3-202ENST00000553340 CSN3P07498 182 aa13.98□□□□□ -0.17
SYNE3-202ENST00000553340 SAPCD1Q5SSQ6 148 aa13.98□□□□□ -0.17
SYNE3-202ENST00000553340 MCRIP2Q9BUT9 160 aaKnown RBP13.98□□□□□ -0.17
SYNE3-202ENST00000553340 A0A1B0GUT8 65 aa13.98□□□□□ -0.17
SYNE3-202ENST00000553340 IGLV2-11P01706 119 aa13.98□□□□□ -0.17
SYNE3-202ENST00000553340 PSG1P11464 419 aa13.98□□□□□ -0.17
SYNE3-202ENST00000553340 PAX2Q02962 417 aa13.98□□□□□ -0.17
SYNE3-202ENST00000553340 EXOC3-AS1Q8N2X6 119 aa13.98□□□□□ -0.17
SYNE3-202ENST00000553340 NEU4Q8WWR8 484 aaPredicted RBP13.98□□□□□ -0.17
SYNE3-202ENST00000553340 RPS20P60866 119 aaKnown RBP13.97□□□□□ -0.17
SYNE3-202ENST00000553340 HIST1H1AQ02539 215 aaPredicted RBP13.97□□□□□ -0.17
SYNE3-202ENST00000553340 LINC01545Q5VT33 79 aa13.97□□□□□ -0.17
SYNE3-202ENST00000553340 C16orf54Q6UWD8 224 aa13.97□□□□□ -0.17
SYNE3-202ENST00000553340 ASCL5Q7RTU5 278 aa13.97□□□□□ -0.17
SYNE3-202ENST00000553340 SLC25A39Q9BZJ4 359 aaPredicted RBP13.97□□□□□ -0.17
SYNE3-202ENST00000553340 TIMM8BQ9Y5J9 83 aaPredicted RBP13.97□□□□□ -0.17
SYNE3-202ENST00000553340 LOXP28300 417 aaPredicted RBP13.97□□□□□ -0.17
SYNE3-202ENST00000553340 DLX6P56179 175 aa13.97□□□□□ -0.17
SYNE3-202ENST00000553340 RIGQ13278 110 aa13.97□□□□□ -0.17
SYNE3-202ENST00000553340 ANKRD39Q53RE8 183 aa13.97□□□□□ -0.17
SYNE3-202ENST00000553340 AP5S1Q9NUS5 200 aa13.97□□□□□ -0.17
SYNE3-202ENST00000553340 F11RQ9Y624 299 aaKnown RBP13.97□□□□□ -0.17
SYNE3-202ENST00000553340 OR2T8A6NH00 312 aa13.96□□□□□ -0.17
SYNE3-202ENST00000553340 TNFRSF13BO14836 293 aaPredicted RBP13.96□□□□□ -0.17
SYNE3-202ENST00000553340 TOX4O94842 621 aa13.96□□□□□ -0.17
SYNE3-202ENST00000553340 IGHV1-8P0DP01 117 aa13.96□□□□□ -0.17
SYNE3-202ENST00000553340 SRSF12Q8WXF0 261 aaKnown RBP13.96□□□□□ -0.17
SYNE3-202ENST00000553340 CTSZQ9UBR2 303 aa13.96□□□□□ -0.17
SYNE3-202ENST00000553340 TRBV6-1A0A0K0K1D8 114 aa13.96□□□□□ -0.17
SYNE3-202ENST00000553340 HOXB4P17483 251 aaPredicted RBP13.96□□□□□ -0.17
SYNE3-202ENST00000553340 TMEM155Q4W5P6 130 aa13.96□□□□□ -0.17
SYNE3-202ENST00000553340 SIGLEC9Q9Y336 463 aa13.96□□□□□ -0.17
SYNE3-202ENST00000553340 CBY3A6NI87 242 aa13.95□□□□□ -0.18
SYNE3-202ENST00000553340 CD5LO43866 347 aa13.95□□□□□ -0.18
SYNE3-202ENST00000553340 IGLC1P0CG04 106 aa13.95□□□□□ -0.18
SYNE3-202ENST00000553340 CNTFRP26992 372 aa13.95□□□□□ -0.18
SYNE3-202ENST00000553340 RNF151Q2KHN1 245 aa13.95□□□□□ -0.18
SYNE3-202ENST00000553340 WFDC8Q8IUA0 241 aa13.95□□□□□ -0.18
SYNE3-202ENST00000553340 CRYGBP07316 175 aa13.95□□□□□ -0.18
SYNE3-202ENST00000553340 ARMS2P0C7Q2 107 aa13.95□□□□□ -0.18
SYNE3-202ENST00000553340 DEFB123Q8N688 67 aa13.95□□□□□ -0.18
SYNE3-202ENST00000553340 PMCHL2Q9BQD1 86 aa13.95□□□□□ -0.18
SYNE3-202ENST00000553340 TMEM133Q9H2Q1 129 aa13.95□□□□□ -0.18
SYNE3-202ENST00000553340 A0A087X0K7 114 aa13.94□□□□□ -0.18
SYNE3-202ENST00000553340 OVOL3O00110 214 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms