RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SAPCD1Q5SSQ6 148 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 TPTE2P1Q5T6R2 138 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 HIST3H2BBQ8N257 126 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 ASCL2Q99929 193 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 IGLV3-9A0A075B6K5 115 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 IZUMO1RA6ND01 250 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 CD33P20138 364 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 GATA4P43694 442 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 MYOZ3Q8TDC0 251 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 OSTCQ9NRP0 149 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 LAMA2P24043 3122 aaKnown RBP13.22□□□□□ -0.29
CUX1-213ENST00000549414 RPLP1P05386 114 aaKnown RBP13.21□□□□□ -0.29
CUX1-213ENST00000549414 KRTAP27-1Q3LI81 207 aa13.21□□□□□ -0.29
CUX1-213ENST00000549414 Q6ZSR3 168 aa13.21□□□□□ -0.29
CUX1-213ENST00000549414 ST6GALNAC3Q8NDV1 305 aa13.21□□□□□ -0.29
CUX1-213ENST00000549414 C14orf144Q96I85 54 aa13.21□□□□□ -0.29
CUX1-213ENST00000549414 C18orf15Q96N68 181 aa13.21□□□□□ -0.29
CUX1-213ENST00000549414 TMEM242Q9NWH2 141 aa13.21□□□□□ -0.29
CUX1-213ENST00000549414 OR4C46A6NHA9 309 aa13.21□□□□□ -0.29
CUX1-213ENST00000549414 PPIFP30405 207 aaKnown RBP13.21□□□□□ -0.29
CUX1-213ENST00000549414 ZNF418Q8TF45 676 aaPredicted RBP13.21□□□□□ -0.29
CUX1-213ENST00000549414 FMC1Q96HJ9 113 aa13.21□□□□□ -0.29
CUX1-213ENST00000549414 RPL15P61313 204 aaKnown RBP13.21□□□□□ -0.29
CUX1-213ENST00000549414 TEX29Q8N6K0 151 aa13.21□□□□□ -0.29
CUX1-213ENST00000549414 ST6GALNAC6Q969X2 333 aa13.21□□□□□ -0.29
CUX1-213ENST00000549414 M0R381 172 aa13.21□□□□□ -0.3
CUX1-213ENST00000549414 TMEM97Q5BJF2 176 aa13.21□□□□□ -0.3
CUX1-213ENST00000549414 TMEM256Q8N2U0 113 aa13.21□□□□□ -0.3
CUX1-213ENST00000549414 OTORQ9NRC9 128 aa13.21□□□□□ -0.3
CUX1-213ENST00000549414 A0A1B0GV90 55 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 GRNP28799 593 aaKnown RBP13.2□□□□□ -0.3
CUX1-213ENST00000549414 AMBPP02760 352 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 LOXP28300 417 aaPredicted RBP13.2□□□□□ -0.3
CUX1-213ENST00000549414 SCGB1D4Q6XE38 83 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 PMCHL2Q9BQD1 86 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 TPSG1Q9NRR2 321 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 TMEM14BQ9NUH8 114 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 PLA2G2EQ9NZK7 142 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 VDAC2P45880 294 aaPredicted RBP13.2□□□□□ -0.3
CUX1-213ENST00000549414 EFNA4P52798 201 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 C8orf46Q8TAG6 207 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 BPESC1Q9GZL8 116 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 POLQO75417 2590 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 PLXNB1O43157 2135 aa13.2□□□□□ -0.3
CUX1-213ENST00000549414 SRRM4A7MD48 611 aaKnown RBP13.19□□□□□ -0.3
CUX1-213ENST00000549414 UQCRFS1P47985 274 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 FAM74A4Q5TZK3 123 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 NUDT10Q8NFP7 164 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 GLMPQ8WWB7 406 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 NUDT11Q96G61 164 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 RAB9AP51151 201 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 PMCHL1Q16048 86 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 TMEM155Q4W5P6 130 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 PVRIGQ6DKI7 326 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 DDB2Q92466 427 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 NRN1Q9NPD7 142 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 PSG8Q9UQ74 426 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 CIARTQ8N365 385 aaPredicted RBP13.19□□□□□ -0.3
CUX1-213ENST00000549414 OR10AG1Q8NH19 301 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 CDC42EP3Q9UKI2 254 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 APOHP02749 345 aaPredicted RBP13.19□□□□□ -0.3
CUX1-213ENST00000549414 CTAG1AP78358 180 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 IGFL4Q6B9Z1 124 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 MAP1LC3AQ9H492 121 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 UQCR10Q9UDW1 63 aa13.19□□□□□ -0.3
CUX1-213ENST00000549414 TRBV20OR9-2A0A075B6H5 130 aa13.18□□□□□ -0.3
CUX1-213ENST00000549414 M0QZK8 103 aa13.18□□□□□ -0.3
CUX1-213ENST00000549414 C15orf32Q32M92 178 aa13.18□□□□□ -0.3
CUX1-213ENST00000549414 SLC25A39Q9BZJ4 359 aaPredicted RBP13.18□□□□□ -0.3
CUX1-213ENST00000549414 F11RQ9Y624 299 aaKnown RBP13.18□□□□□ -0.3
CUX1-213ENST00000549414 CFHR2P36980 270 aa13.18□□□□□ -0.3
CUX1-213ENST00000549414 C5orf64Q2M2E5 130 aa13.18□□□□□ -0.3
CUX1-213ENST00000549414 SNAI2O43623 268 aa13.18□□□□□ -0.3
CUX1-213ENST00000549414 Q1RN00 199 aa13.18□□□□□ -0.3
CUX1-213ENST00000549414 PYY3Q5JQD4 70 aa13.18□□□□□ -0.3
CUX1-213ENST00000549414 M0R3E3 92 aa13.17□□□□□ -0.3
CUX1-213ENST00000549414 A0A1B0GWJ7 208 aa13.17□□□□□ -0.3
CUX1-213ENST00000549414 RPS20P60866 119 aaKnown RBP13.17□□□□□ -0.3
CUX1-213ENST00000549414 COL5A1-AS1Q5SY13 56 aa13.17□□□□□ -0.3
CUX1-213ENST00000549414 IGFBPL1Q8WX77 278 aa13.17□□□□□ -0.3
CUX1-213ENST00000549414 PRELID3AQ96N28 172 aa13.17□□□□□ -0.3
CUX1-213ENST00000549414 ZFP30Q9Y2G7 519 aa13.17□□□□□ -0.3
CUX1-213ENST00000549414 CEP192Q8TEP8 1941 aa13.17□□□□□ -0.3
CUX1-213ENST00000549414 A0A1B0GUS0 222 aa13.17□□□□□ -0.3
CUX1-213ENST00000549414 PRB1P04280 392 aa13.17□□□□□ -0.3
CUX1-213ENST00000549414 IGFL2Q6UWQ7 119 aa13.17□□□□□ -0.3
CUX1-213ENST00000549414 TMEM70Q9BUB7 260 aa13.17□□□□□ -0.3
CUX1-213ENST00000549414 NPIPB5A8MRT5 1133 aa13.16□□□□□ -0.3
CUX1-213ENST00000549414 FOSL1P15407 271 aa13.16□□□□□ -0.3
CUX1-213ENST00000549414 SEM1Q6ZVN7 128 aa13.16□□□□□ -0.3
CUX1-213ENST00000549414 ZNF502Q8TBZ5 544 aa13.16□□□□□ -0.3
CUX1-213ENST00000549414 Q8TCH9 128 aa13.16□□□□□ -0.3
CUX1-213ENST00000549414 IGKV2-40A0A087WW87 121 aaPredicted RBP13.16□□□□□ -0.3
CUX1-213ENST00000549414 C10orf142B7Z368 130 aa13.16□□□□□ -0.3
CUX1-213ENST00000549414 IGKV2D-40P01614 121 aaPredicted RBP13.16□□□□□ -0.3
CUX1-213ENST00000549414 REC114Q7Z4M0 266 aa13.16□□□□□ -0.3
CUX1-213ENST00000549414 ITGB1BP1O14713 200 aa13.16□□□□□ -0.3
CUX1-213ENST00000549414 SRD5A1P18405 259 aa13.16□□□□□ -0.3
CUX1-213ENST00000549414 WT1-ASQ06250 92 aa13.16□□□□□ -0.3
CUX1-213ENST00000549414 SP5Q6BEB4 398 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms