RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 OR1L6Q8NGR2 347 aa12.86□□□□□ -0.35
COL4A1-204ENST00000543140 FAM168AQ92567 244 aa12.86□□□□□ -0.35
COL4A1-204ENST00000543140 CRYBG3Q68DQ2 2970 aa12.86□□□□□ -0.35
COL4A1-204ENST00000543140 DOPEY1Q5JWR5 2465 aa12.86□□□□□ -0.35
COL4A1-204ENST00000543140 ZNF705GA8MUZ8 300 aaPredicted RBP12.86□□□□□ -0.35
COL4A1-204ENST00000543140 FAM106CPP0CH98 169 aa12.86□□□□□ -0.35
COL4A1-204ENST00000543140 Q9H3A6 140 aa12.86□□□□□ -0.35
COL4A1-204ENST00000543140 IGLV11-55A0A075B6I3 123 aa12.85□□□□□ -0.35
COL4A1-204ENST00000543140 GNG7O60262 68 aa12.85□□□□□ -0.35
COL4A1-204ENST00000543140 IL4P05112 153 aa12.85□□□□□ -0.35
COL4A1-204ENST00000543140 PRB4P10163 310 aaPredicted RBP12.85□□□□□ -0.35
COL4A1-204ENST00000543140 UBE2G1P62253 170 aa12.85□□□□□ -0.35
COL4A1-204ENST00000543140 BCL6BQ8N143 479 aaPredicted RBP12.85□□□□□ -0.35
COL4A1-204ENST00000543140 ZNF586Q9NXT0 402 aa12.85□□□□□ -0.35
COL4A1-204ENST00000543140 MRPL27Q9P0M9 148 aaKnown RBP12.85□□□□□ -0.35
COL4A1-204ENST00000543140 IGHV3OR16-10A0A075B7F0 116 aa12.85□□□□□ -0.35
COL4A1-204ENST00000543140 IGHV7-81A0A0B4J1V7 117 aa12.85□□□□□ -0.35
COL4A1-204ENST00000543140 NPIPB5A8MRT5 1133 aa12.85□□□□□ -0.35
COL4A1-204ENST00000543140 AMBPP02760 352 aa12.85□□□□□ -0.35
COL4A1-204ENST00000543140 PIP4P2Q8N4L2 257 aa12.85□□□□□ -0.35
COL4A1-204ENST00000543140 Q8N9W7 124 aa12.85□□□□□ -0.35
COL4A1-204ENST00000543140 TBL2Q9Y4P3 447 aaKnown RBP12.85□□□□□ -0.35
COL4A1-204ENST00000543140 RNF224P0DH78 156 aa12.84□□□□□ -0.35
COL4A1-204ENST00000543140 YPEL3P61236 119 aaPredicted RBP12.84□□□□□ -0.35
COL4A1-204ENST00000543140 COA6Q5JTJ3 125 aaKnown RBP12.84□□□□□ -0.35
COL4A1-204ENST00000543140 ZNF491Q8N8L2 437 aa12.84□□□□□ -0.35
COL4A1-204ENST00000543140 GRIFINA4D1Z8 144 aa12.84□□□□□ -0.35
COL4A1-204ENST00000543140 OR2J3O76001 311 aa12.84□□□□□ -0.35
COL4A1-204ENST00000543140 EGR2P11161 476 aaPredicted RBP12.84□□□□□ -0.35
COL4A1-204ENST00000543140 PDLIM4P50479 330 aa12.84□□□□□ -0.35
COL4A1-204ENST00000543140 Q56UQ5 140 aa12.84□□□□□ -0.35
COL4A1-204ENST00000543140 EXOC3-AS1Q8N2X6 119 aa12.84□□□□□ -0.35
COL4A1-204ENST00000543140 TTC9CQ8N5M4 171 aa12.84□□□□□ -0.35
COL4A1-204ENST00000543140 RNF125Q96EQ8 232 aa12.84□□□□□ -0.35
COL4A1-204ENST00000543140 CCL19Q99731 98 aa12.84□□□□□ -0.35
COL4A1-204ENST00000543140 HSPB9Q9BQS6 159 aa12.84□□□□□ -0.35
COL4A1-204ENST00000543140 MRPL18Q9H0U6 180 aaKnown RBP12.84□□□□□ -0.35
COL4A1-204ENST00000543140 TRAV9-1A0A075B6T8 112 aa12.83□□□□□ -0.36
COL4A1-204ENST00000543140 TMEM8BA6NDV4 472 aa12.83□□□□□ -0.36
COL4A1-204ENST00000543140 SH2D7A6NKC9 451 aaPredicted RBP12.83□□□□□ -0.36
COL4A1-204ENST00000543140 NDUFB8O95169 186 aa12.83□□□□□ -0.36
COL4A1-204ENST00000543140 TMEM183BQ1AE95 376 aa12.83□□□□□ -0.36
COL4A1-204ENST00000543140 C17orf77Q96MU5 243 aa12.83□□□□□ -0.36
COL4A1-204ENST00000543140 SNURFLB1AK76 121 aa12.83□□□□□ -0.36
COL4A1-204ENST00000543140 C5orf17Q8NAS9 161 aa12.83□□□□□ -0.36
COL4A1-204ENST00000543140 USP24Q9UPU5 2620 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 ZFHX3Q15911 3703 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 TOMM40O96008 361 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 FCGR2BP31994 310 aaPredicted RBP12.82□□□□□ -0.36
COL4A1-204ENST00000543140 BRS3P32247 399 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 MFAP4P55083 255 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 MRPL54Q6P161 138 aaKnown RBP12.82□□□□□ -0.36
COL4A1-204ENST00000543140 TMEM256Q8N2U0 113 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 ATG101Q9BSB4 218 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 SHANK2-AS3Q9BTD1 123 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 F8W735 103 aaPredicted RBP12.82□□□□□ -0.36
COL4A1-204ENST00000543140 NPFFO15130 113 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 HIST1H1EP10412 219 aaKnown RBP12.82□□□□□ -0.36
COL4A1-204ENST00000543140 NUDT10Q8NFP7 164 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 NUDT11Q96G61 164 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 TMUB1Q9BVT8 246 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 C21orf62Q9NYP8 219 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 C1RLQ9NZP8 487 aa12.82□□□□□ -0.36
COL4A1-204ENST00000543140 CELSR2Q9HCU4 2923 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 TRAV8-1A0A0A6YYK1 113 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 IGHV4-61A0A0C4DH41 118 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 CENPVL3A0A0U1RRI6 287 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 OR2T8A6NH00 312 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 TCRAP04437 139 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 RAB4BP61018 213 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 USF2Q15853 346 aaPredicted RBP12.81□□□□□ -0.36
COL4A1-204ENST00000543140 TMEM14CQ9P0S9 112 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 SMIM27A0A1W2PRY6 76 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 ECSCRQ19T08 205 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 TMEM68Q96MH6 324 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 KLF12Q9Y4X4 402 aa12.81□□□□□ -0.36
COL4A1-204ENST00000543140 H3BRN7 92 aa12.8□□□□□ -0.36
COL4A1-204ENST00000543140 GATCO43716 136 aaKnown RBP12.8□□□□□ -0.36
COL4A1-204ENST00000543140 NUPR1O60356 82 aa12.8□□□□□ -0.36
COL4A1-204ENST00000543140 BPIFA4PQ86YQ2 179 aa12.8□□□□□ -0.36
COL4A1-204ENST00000543140 PRO1933Q9H354 126 aa12.8□□□□□ -0.36
COL4A1-204ENST00000543140 ZMAT5Q9UDW3 170 aaKnown RBP12.8□□□□□ -0.36
COL4A1-204ENST00000543140 FBXL7Q9UJT9 491 aa12.8□□□□□ -0.36
COL4A1-204ENST00000543140 IGHV3-35A0A0C4DH35 117 aa12.8□□□□□ -0.36
COL4A1-204ENST00000543140 LINC01548A6NM66 108 aa12.8□□□□□ -0.36
COL4A1-204ENST00000543140 PRB1P04280 392 aa12.8□□□□□ -0.36
COL4A1-204ENST00000543140 GPR82Q96P67 336 aa12.8□□□□□ -0.36
COL4A1-204ENST00000543140 THYN1Q9P016 225 aa12.8□□□□□ -0.36
COL4A1-204ENST00000543140 NAT8BQ9UHF3 227 aa12.8□□□□□ -0.36
COL4A1-204ENST00000543140 IGHV3OR16-8A0A075B7F1 116 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 TRAV30A0A087WSZ9 112 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 WI2-2373I1.2A0A1W2PRP0 233 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 UNQ5815/PRO19632Q6UWF5 114 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 BRD3OSQ6XYD6 125 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 CMTM2Q8TAZ6 248 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 PIMREGQ9BSJ6 248 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 C7orf69Q9H7B7 122 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 OTORQ9NRC9 128 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 ATP6V0E1O15342 81 aa12.79□□□□□ -0.36
COL4A1-204ENST00000543140 HLA-DRB1P01911 266 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms