RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 THSD7AQ9UPZ6 1657 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 ADAMTSL1Q8N6G6 1762 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 TRAV27A0A087WT01 109 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 TRAV4A0A0B4J268 109 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 MYBPHLA2RUH7 354 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 A8MWL6 223 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 PLPP1O14494 284 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 CXCL8P10145 99 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 EMDP50402 254 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 HBG1P69891 147 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 HBG2P69892 147 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 DEFB121Q5J5C9 76 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 FAM120AOSQ5T036 256 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 FRG2Q64ET8 278 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 HRCT1Q6UXD1 115 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 AMN1Q8IY45 258 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 MMD2Q8IY49 270 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 CIARTQ8N365 385 aaPredicted RBP4.35□□□□□ -1.71
CD44-236ENST00000533222 POM121L12Q8N7R1 296 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 IL1F10Q8WWZ1 152 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 RND1Q92730 232 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 CARD19Q96LW7 228 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 NAA38Q9BRA0 125 aaKnown RBP4.35□□□□□ -1.71
CD44-236ENST00000533222 SPRY4Q9C004 299 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 SERP1Q9Y6X1 66 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 NLRC5Q86WI3 1866 aa4.35□□□□□ -1.71
CD44-236ENST00000533222 LCTP09848 1927 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 SMIM26A0A096LP01 95 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 TRAV13-1A0A0B4J241 112 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 TRBV7-6A0A0J9YX20 115 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 SMIM27A0A1W2PRY6 76 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 hDV102S1A0JD36 115 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 IZUMO1RA6ND01 250 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 C17orf51A8MQB3 221 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 ENSAO43768 121 aaKnown RBP4.34□□□□□ -1.71
CD44-236ENST00000533222 PPYP01298 95 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 GYPBP06028 91 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 GP1BBP13224 206 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 CTLA4P16410 223 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 INSL3P51460 131 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 CLDN17P56750 224 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 UBE2D3P61077 147 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 PPP1CAP62136 330 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 UBE2D2P62837 147 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 QRFPP83859 136 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 TMEM170BQ5T4T1 132 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 PDPNQ86YL7 162 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 OR5C1Q8NGR4 320 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 OR2A1Q8NGT9 310 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 OR2T6Q8NHC8 308 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 HDHD3Q9BSH5 251 aaPredicted RBP4.34□□□□□ -1.71
CD44-236ENST00000533222 SHANK2-AS3Q9BTD1 123 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 SRXN1Q9BYN0 137 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 MYO16Q9Y6X6 1858 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 VWA8A3KMH1 1905 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 NUMA1Q14980 2115 aa4.34□□□□□ -1.71
CD44-236ENST00000533222 DOCK8Q8NF50 2099 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 DOCK3Q8IZD9 2030 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 IGKV6D-41A0A0C4DH26 115 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 FAM236DA0A1B0GTK5 79 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 TCRBV4S1A1TA0A5B7 111 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 H7C1H1 209 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 FAM236CP0DP71 79 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 AQP1P29972 269 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 CSN1S1P47710 185 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 ATP5EP56381 51 aaPredicted RBP4.33□□□□□ -1.72
CD44-236ENST00000533222 FXYD6P3P58550 94 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 HIST1H4AP62805 103 aaKnown RBP4.33□□□□□ -1.72
CD44-236ENST00000533222 POLR2LP62875 67 aaKnown RBP4.33□□□□□ -1.72
CD44-236ENST00000533222 SRYQ05066 204 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 VGLL4Q14135 290 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 VMA21Q3ZAQ7 101 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 C22orf39Q6P5X5 142 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 PRR15Q8IV56 129 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 CLECL1Q8IZS7 167 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 DRAM1Q8N682 238 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 NFAM1Q8NET5 270 aaPredicted RBP4.33□□□□□ -1.72
CD44-236ENST00000533222 FAM57AQ8TBR7 257 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 ZNF442Q9H7R0 627 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 FAM60AQ9NP50 221 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 ZNF331Q9NQX6 463 aaPredicted RBP4.33□□□□□ -1.72
CD44-236ENST00000533222 DOCK9Q9BZ29 2069 aa4.33□□□□□ -1.72
CD44-236ENST00000533222 TRBV19A0A075B6N1 114 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 TRGV5A0A0B4J1U4 118 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 TRAV2A0A0B4J234 112 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 TRAV26-2A0A0B4J265 109 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 IGLV5-39A0A0G2JS06 123 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 C5orf63A6NC05 138 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 OOSP1A8MZH6 123 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 LOC730098B7Z3J9 87 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 F2Z2F3 143 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 TIMM23O14925 209 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 BUB3O43684 328 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 BCE1O60756 84 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 NPYP01303 97 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 IGKCP01834 107 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 LGALS2P05162 132 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 DSCR4P56555 118 aaPredicted RBP4.32□□□□□ -1.72
CD44-236ENST00000533222 CCL8P80075 99 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 ZNF726P1Q15940 193 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms