RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ZNF682O95780 498 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 IFNA1P01562 189 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 APOA2P02652 100 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 PHBP35232 272 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 SRP14P37108 136 aaKnown RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 PPP1R2P41236 205 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 SERPINB9P50453 376 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 TCTAP57738 103 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 CDC42P60953 191 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 HSPE1P61604 102 aaKnown RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 RHOGP84095 191 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 RNASE10Q5GAN6 216 aaKnown RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 BCL2L15Q5TBC7 163 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 PPP1R2P3Q6NXS1 205 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 DHRS4L2Q6PKH6 230 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 S100A7AQ86SG5 101 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 CROCCP2Q86T23 111 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 IFT20Q8IY31 132 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 Q8N814 137 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 ZNF418Q8TF45 676 aaPredicted RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 ZHX1-C8orf76Q96EF9 292 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 YPEL2Q96QA6 119 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 GPER1Q99527 375 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 PBDC1Q9BVG4 233 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 RNASE7Q9H1E1 156 aaKnown RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 GID8Q9NWU2 228 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 NHP2Q9NX24 153 aaKnown RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 ATPIF1Q9UII2 106 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 SSR3Q9UNL2 185 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 UTP11Q9Y3A2 253 aaKnown RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 ANKRD36BQ8N2N9 1353 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 TMEM2Q9UHN6 1383 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 UHRF1BP1LA0JNW5 1464 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 POLA1P09884 1462 aaPredicted RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 HECW2Q9P2P5 1572 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 WIZO95785 1651 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 EML6Q6ZMW3 1958 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 ZNF469Q96JG9 3925 aaPredicted RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 CCDC180Q9P1Z9 1646 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 EPRSP07814 1512 aaKnown RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 ARHGAP5Q13017 1502 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 FAM135AQ9P2D6 1515 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 PIK3C2GO75747 1445 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 PPIP5K1Q6PFW1 1433 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 NSD3Q9BZ95 1437 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 CCDC171Q6TFL3 1326 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 FANCAO15360 1455 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 A2MP01023 1474 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 ARAP1Q96P48 1450 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 ARHGEF10O15013 1369 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 TRBV19A0A075B6N1 114 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 C7orf71A4D174 169 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 C1orf196B1AJZ1 125 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 H7C1C5 153 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 CST8O60676 142 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 GGCTO75223 188 aaKnown RBP0.63□□□□□ -2.31
VPS50-219ENST00000495039 BANF1O75531 89 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 OR2J2O76002 312 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 PROSCO94903 275 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 MGST1P10620 155 aaKnown RBP0.63□□□□□ -2.31
VPS50-219ENST00000495039 PIGPP57054 158 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 NCALDP61601 193 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 LCN6P62502 163 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 MYL5Q02045 173 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 TSNQ15631 228 aaKnown RBP0.63□□□□□ -2.31
VPS50-219ENST00000495039 ALX1Q15699 326 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 LCA10Q71F78 164 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 SMIM5Q71RC9 77 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 STX19Q8N4C7 294 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 OR8D4Q8NGM9 314 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 SFT2D1Q8WV19 159 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 MALSU1Q96EH3 234 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 HIST1H2BLQ99880 126 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 PRRT1Q99946 306 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 RNF122Q9H9V4 155 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 BIN3Q9NQY0 253 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 LYRM2Q9NU23 88 aaPredicted RBP0.63□□□□□ -2.31
VPS50-219ENST00000495039 LAMTOR3Q9UHA4 124 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 EPDR1Q9UM22 224 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 SLC35A3Q9Y2D2 325 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 CC2D2AQ9P2K1 1620 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 ARHGEF11O15085 1522 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 CUX1P39880 1505 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 URB2Q14146 1524 aaKnown RBP0.63□□□□□ -2.31
VPS50-219ENST00000495039 ABCA10Q8WWZ4 1543 aa0.63□□□□□ -2.31
VPS50-219ENST00000495039 YTHDC2Q9H6S0 1430 aaKnown RBP0.63□□□□□ -2.31
VPS50-219ENST00000495039 CEP192Q8TEP8 1941 aa0.62□□□□□ -2.31
VPS50-219ENST00000495039 NKTRP30414 1462 aaKnown RBP0.62□□□□□ -2.31
VPS50-219ENST00000495039 GRIN2AQ12879 1464 aa0.62□□□□□ -2.31
VPS50-219ENST00000495039 CCDC141Q6ZP82 1450 aa0.62□□□□□ -2.31
VPS50-219ENST00000495039 TEX14Q8IWB6 1497 aa0.62□□□□□ -2.31
VPS50-219ENST00000495039 WDR7Q9Y4E6 1490 aa0.62□□□□□ -2.31
VPS50-219ENST00000495039 RTL9Q8NET4 1388 aa0.62□□□□□ -2.31
VPS50-219ENST00000495039 IBTKQ9P2D0 1353 aaPredicted RBP0.62□□□□□ -2.31
VPS50-219ENST00000495039 TRGV10A0A0A0MS01 117 aa0.62□□□□□ -2.31
VPS50-219ENST00000495039 TRBV6-8A0A0A6YYG3 113 aa0.62□□□□□ -2.31
VPS50-219ENST00000495039 A0A0D9SFI3 127 aa0.62□□□□□ -2.31
VPS50-219ENST00000495039 PVALEFA0A1B0GWK0 134 aa0.62□□□□□ -2.31
VPS50-219ENST00000495039 DUXBA0A1W2PPF3 345 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 167.1 ms