RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LINC01356Q8N9X3 169 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 RNASEH2CQ8TDP1 164 aaKnown RBP9.64□□□□□ -0.87
HDAC6-230ENST00000488543 SCGB1D1O95968 90 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 IGHV3-48P01763 117 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 LINC00869P0C866 280 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 IGHV4-31P0DP07 118 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 SLC35B1P78383 322 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 PRR20EP86478 221 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 PRR20CP86479 221 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 PRR20DP86480 221 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 PRR20BP86481 221 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 PRR20AP86496 221 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 USF2Q15853 346 aaPredicted RBP9.63□□□□□ -0.87
HDAC6-230ENST00000488543 COA6Q5JTJ3 125 aaKnown RBP9.63□□□□□ -0.87
HDAC6-230ENST00000488543 PRSS57Q6UWY2 283 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 GBGT1Q8N5D6 347 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 SRSF12Q8WXF0 261 aaKnown RBP9.63□□□□□ -0.87
HDAC6-230ENST00000488543 CACNG8Q8WXS5 425 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 SLC45A2Q9UMX9 530 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 A8MWP6 167 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 NPFFO15130 113 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 TYMSP04818 313 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 OR10J4P0C629 311 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 APELAP0DMC3 54 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 RPL29P47914 159 aaKnown RBP9.63□□□□□ -0.87
HDAC6-230ENST00000488543 SUB1P53999 127 aaKnown RBP eCLIP9.63□□□□□ -0.877e-9■■■□□ 16.5
HDAC6-230ENST00000488543 OR2T6Q8NHC8 308 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 ACY3Q96HD9 319 aa9.63□□□□□ -0.87
HDAC6-230ENST00000488543 MRPL36Q9P0J6 103 aaKnown RBP9.63□□□□□ -0.87
HDAC6-230ENST00000488543 CXorf1O96002 111 aa9.62□□□□□ -0.87
HDAC6-230ENST00000488543 HES1Q14469 280 aa9.62□□□□□ -0.87
HDAC6-230ENST00000488543 FXYD3Q14802 87 aa9.62□□□□□ -0.87
HDAC6-230ENST00000488543 PLGLAQ15195 96 aa9.62□□□□□ -0.87
HDAC6-230ENST00000488543 C5orf64Q2M2E5 130 aa9.62□□□□□ -0.87
HDAC6-230ENST00000488543 KLF17Q5JT82 389 aaPredicted RBP9.62□□□□□ -0.87
HDAC6-230ENST00000488543 PRR31Q5SQ13 230 aa9.62□□□□□ -0.87
HDAC6-230ENST00000488543 SONP18583 2426 aaKnown RBP9.62□□□□□ -0.87
HDAC6-230ENST00000488543 FAM120AOSQ5T036 256 aa9.62□□□□□ -0.87
HDAC6-230ENST00000488543 OR10G8Q8NGN5 311 aa9.62□□□□□ -0.87
HDAC6-230ENST00000488543 TMEM18Q96B42 140 aa9.62□□□□□ -0.87
HDAC6-230ENST00000488543 ATG101Q9BSB4 218 aa9.62□□□□□ -0.87
HDAC6-230ENST00000488543 TP53TG3Q9ULZ0 132 aa9.62□□□□□ -0.87
HDAC6-230ENST00000488543 OTOGQ6ZRI0 2925 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 CRYGCP07315 174 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 OR10J1P30954 320 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 TCL1AP56279 114 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 LINC00310P59036 64 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 ZNF90Q03938 601 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 RAB31Q13636 194 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 NHLRC2Q8NBF2 726 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 C22orf15Q8WYQ4 148 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 SLC35E1Q96K37 410 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 IGHV1-69DA0A0B4J2H0 117 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 IGHV1-69P01742 117 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 TDRG1Q3Y452 100 aa9.61□□□□□ -0.87
HDAC6-230ENST00000488543 SRSF8Q9BRL6 282 aaKnown RBP9.61□□□□□ -0.87
HDAC6-230ENST00000488543 RNASE7Q9H1E1 156 aaKnown RBP9.61□□□□□ -0.87
HDAC6-230ENST00000488543 F11RQ9Y624 299 aaKnown RBP9.61□□□□□ -0.87
HDAC6-230ENST00000488543 IGKV1D-37A0A075B6S9 117 aa9.6□□□□□ -0.87
HDAC6-230ENST00000488543 CRYBB3P26998 211 aa9.6□□□□□ -0.87
HDAC6-230ENST00000488543 IER3P46695 156 aa9.6□□□□□ -0.87
HDAC6-230ENST00000488543 MORN5Q5VZ52 161 aa9.6□□□□□ -0.87
HDAC6-230ENST00000488543 THAP8Q8NA92 274 aa9.6□□□□□ -0.87
HDAC6-230ENST00000488543 KIAA1644Q3SXP7 199 aa9.6□□□□□ -0.87
HDAC6-230ENST00000488543 RNF114Q9Y508 228 aa9.6□□□□□ -0.87
HDAC6-230ENST00000488543 TRAV5A0A0B4J249 113 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 CNIH1O95406 144 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 GCGP01275 180 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 RHOBP62745 196 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 NDPQ00604 133 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 CENPWQ5EE01 88 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 OR8I2Q8N0Y5 310 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 OR1L6Q8NGR2 347 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 NPIPB3Q92617 1050 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 ZNF503Q96F45 646 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 MRPL18Q9H0U6 180 aaKnown RBP9.59□□□□□ -0.87
HDAC6-230ENST00000488543 CHTOPQ9Y3Y2 248 aaKnown RBP9.59□□□□□ -0.87
HDAC6-230ENST00000488543 ZNF705FA8MVS1 300 aaPredicted RBP9.59□□□□□ -0.87
HDAC6-230ENST00000488543 OR7C2O60412 319 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 SERF1AO75920 110 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 ZNF705DP0CH99 300 aaPredicted RBP9.59□□□□□ -0.87
HDAC6-230ENST00000488543 ZNF705BP0CI00 300 aaPredicted RBP9.59□□□□□ -0.87
HDAC6-230ENST00000488543 FOXL1Q12952 345 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 DNLZQ5SXM8 178 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 PQLC2Q6ZP29 291 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 Q8N9W7 124 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 MS4A10Q96PG2 267 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 FOXC2Q99958 501 aa9.59□□□□□ -0.87
HDAC6-230ENST00000488543 CA1P00915 261 aaPredicted RBP9.58□□□□□ -0.88
HDAC6-230ENST00000488543 ERVFC1-1P60608 527 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 CX3CL1P78423 397 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 Q6ZWC4 215 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 SLC25A33Q9BSK2 321 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 FAM103A1Q9BTL3 118 aaKnown RBP9.58□□□□□ -0.88
HDAC6-230ENST00000488543 PSMB11A5LHX3 300 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 NCBP2LA6PVI3 153 aaKnown RBP9.58□□□□□ -0.88
HDAC6-230ENST00000488543 FAM106CPP0CH98 169 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 CD99P14209 185 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 GATA3P23771 443 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 ZNF562Q6V9R5 426 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms