RNA–Protein interactions for RNA: ENST00000481641.1

CLK1-211, Transcript of CDC like kinase 1, humanhuman

TSL 4

Gene CLK1, Length 690 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-211ENST00000481641 TMED3Q9Y3Q3 217 aa13.35□□□□□ -0.27
CLK1-211ENST00000481641 IGHV4-4A0A075B6R2 117 aa13.34□□□□□ -0.27
CLK1-211ENST00000481641 PIGBOS1A0A0B4J2F0 54 aa13.34□□□□□ -0.27
CLK1-211ENST00000481641 PRSS46E5RG02 174 aa13.34□□□□□ -0.27
CLK1-211ENST00000481641 F6UB75 175 aa13.34□□□□□ -0.27
CLK1-211ENST00000481641 H3BP45 60 aa13.34□□□□□ -0.27
CLK1-211ENST00000481641 FABP1P07148 127 aa13.34□□□□□ -0.27
CLK1-211ENST00000481641 GATA2P23769 480 aaPredicted RBP13.34□□□□□ -0.27
CLK1-211ENST00000481641 ID1P41134 155 aa13.34□□□□□ -0.27
CLK1-211ENST00000481641 C1orf194Q5T5A4 169 aa13.34□□□□□ -0.27
CLK1-211ENST00000481641 TMEM182Q6ZP80 229 aaPredicted RBP13.34□□□□□ -0.27
CLK1-211ENST00000481641 OR8I2Q8N0Y5 310 aa13.34□□□□□ -0.27
CLK1-211ENST00000481641 SAV1Q9H4B6 383 aaPredicted RBP13.34□□□□□ -0.27
CLK1-211ENST00000481641 IGHV3OR16-12A0A075B7B8 117 aa13.33□□□□□ -0.28
CLK1-211ENST00000481641 ADAP1O75689 374 aa13.33□□□□□ -0.28
CLK1-211ENST00000481641 PSMB3P49720 205 aa13.33□□□□□ -0.28
CLK1-211ENST00000481641 SPANXN5Q5MJ07 72 aa13.33□□□□□ -0.28
CLK1-211ENST00000481641 FOXI2Q6ZQN5 318 aa13.33□□□□□ -0.28
CLK1-211ENST00000481641 OR4B1Q8NGF8 309 aa13.33□□□□□ -0.28
CLK1-211ENST00000481641 COQ8AQ8NI60 647 aa13.33□□□□□ -0.28
CLK1-211ENST00000481641 CIB3Q96Q77 187 aaPredicted RBP13.33□□□□□ -0.28
CLK1-211ENST00000481641 SRRQ9GZT4 340 aa13.33□□□□□ -0.28
CLK1-211ENST00000481641 RBM38Q9H0Z9 239 aaKnown RBP13.33□□□□□ -0.28
CLK1-211ENST00000481641 SLC35B3Q9H1N7 401 aa13.33□□□□□ -0.28
CLK1-211ENST00000481641 EMP1P54849 157 aa13.32□□□□□ -0.28
CLK1-211ENST00000481641 BAK1Q16611 211 aa13.32□□□□□ -0.28
CLK1-211ENST00000481641 ZNF705AQ6ZN79 300 aaPredicted RBP13.32□□□□□ -0.28
CLK1-211ENST00000481641 C20orf173Q96LM9 149 aa13.32□□□□□ -0.28
CLK1-211ENST00000481641 C17orf77Q96MU5 243 aa13.32□□□□□ -0.28
CLK1-211ENST00000481641 SLC25A32Q9H2D1 315 aa13.32□□□□□ -0.28
CLK1-211ENST00000481641 SLC25A22Q9H936 323 aa13.32□□□□□ -0.28
CLK1-211ENST00000481641 FLVCR2Q9UPI3 526 aa13.32□□□□□ -0.28
CLK1-211ENST00000481641 DEFB131BA0A096LNP1 70 aa13.31□□□□□ -0.28
CLK1-211ENST00000481641 C9orf170A2RU37 121 aa13.31□□□□□ -0.28
CLK1-211ENST00000481641 RPP30P78346 268 aaKnown RBP13.31□□□□□ -0.28
CLK1-211ENST00000481641 ZNF709Q8N972 641 aa13.31□□□□□ -0.28
CLK1-211ENST00000481641 DEDD2Q8WXF8 326 aa13.31□□□□□ -0.28
CLK1-211ENST00000481641 LINC00854A0A1B0GVQ3 168 aa13.3□□□□□ -0.28
CLK1-211ENST00000481641 ZNF98A6NK75 572 aa13.3□□□□□ -0.28
CLK1-211ENST00000481641 ZNF705FA8MVS1 300 aaPredicted RBP13.3□□□□□ -0.28
CLK1-211ENST00000481641 ZNF705DP0CH99 300 aaPredicted RBP13.3□□□□□ -0.28
CLK1-211ENST00000481641 ZNF705BP0CI00 300 aaPredicted RBP13.3□□□□□ -0.28
CLK1-211ENST00000481641 ORM2P19652 201 aa13.3□□□□□ -0.28
CLK1-211ENST00000481641 POLR2GP62487 172 aaKnown RBP eCLIP13.3□□□□□ -0.28
CLK1-211ENST00000481641 AKR1C1Q04828 323 aa13.3□□□□□ -0.28
CLK1-211ENST00000481641 FAM78BQ5VT40 261 aa13.3□□□□□ -0.28
CLK1-211ENST00000481641 ACOT7LQ6ZUV0 252 aa13.3□□□□□ -0.28
CLK1-211ENST00000481641 RSG1Q9BU20 258 aa13.3□□□□□ -0.28
CLK1-211ENST00000481641 RNF126Q9BV68 326 aa13.3□□□□□ -0.28
CLK1-211ENST00000481641 STRAPQ9Y3F4 350 aaKnown RBP13.3□□□□□ -0.28
CLK1-211ENST00000481641 ISLRO14498 428 aa13.29□□□□□ -0.28
CLK1-211ENST00000481641 SPANXN2Q5MJ10 180 aa13.29□□□□□ -0.28
CLK1-211ENST00000481641 OR1B1Q8NGR6 318 aa13.29□□□□□ -0.28
CLK1-211ENST00000481641 C16orf92Q96LL3 132 aa13.29□□□□□ -0.28
CLK1-211ENST00000481641 NEU1Q99519 415 aa13.29□□□□□ -0.28
CLK1-211ENST00000481641 A0A0J9YX75 114 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 SMCO3A2RU48 225 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 CCNKO75909 580 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 NDUFB6O95139 128 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 GALR1P47211 349 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 INPP1P49441 399 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 UBE2MP61081 183 aaKnown RBP13.28□□□□□ -0.28
CLK1-211ENST00000481641 PSG9Q00887 426 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 ID3Q02535 119 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 IGFL4Q6B9Z1 124 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 EBLN2Q6P2I7 272 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 BPIFCQ8NFQ6 507 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 PSENENQ9NZ42 101 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 PLA2G2EQ9NZK7 142 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 DOK5Q9P104 306 aa13.28□□□□□ -0.28
CLK1-211ENST00000481641 CFDP00746 253 aaPredicted RBP13.27□□□□□ -0.29
CLK1-211ENST00000481641 PAX9P55771 341 aa13.27□□□□□ -0.29
CLK1-211ENST00000481641 TRIQKQ629K1 86 aa13.27□□□□□ -0.29
CLK1-211ENST00000481641 C1orf158Q8N1D5 194 aa13.27□□□□□ -0.29
CLK1-211ENST00000481641 OR4D5Q8NGN0 318 aa13.27□□□□□ -0.29
CLK1-211ENST00000481641 CLUHP3Q96NS8 147 aa13.27□□□□□ -0.29
CLK1-211ENST00000481641 SDHCQ99643 169 aaPredicted RBP13.27□□□□□ -0.29
CLK1-211ENST00000481641 RPRMQ9NS64 109 aa13.27□□□□□ -0.29
CLK1-211ENST00000481641 SSSCA1O60232 199 aa13.26□□□□□ -0.29
CLK1-211ENST00000481641 AMBPP02760 352 aa13.26□□□□□ -0.29
CLK1-211ENST00000481641 OR4E1P0C645 316 aa13.26□□□□□ -0.29
CLK1-211ENST00000481641 SPART-AS1P0CW21 52 aa13.26□□□□□ -0.29
CLK1-211ENST00000481641 ANXA7P20073 488 aaKnown RBP13.26□□□□□ -0.29
CLK1-211ENST00000481641 TMEM144Q7Z5S9 345 aa13.26□□□□□ -0.29
CLK1-211ENST00000481641 TMEM147Q9BVK8 224 aa13.26□□□□□ -0.29
CLK1-211ENST00000481641 SLC45A2Q9UMX9 530 aa13.26□□□□□ -0.29
CLK1-211ENST00000481641 RFNGQ9Y644 331 aa13.26□□□□□ -0.29
CLK1-211ENST00000481641 HECTD4Q9Y4D8 3996 aa13.26□□□□□ -0.29
CLK1-211ENST00000481641 NAP1L6A6NFF2 107 aa13.25□□□□□ -0.29
CLK1-211ENST00000481641 SMIM9A6NGZ8 99 aa13.25□□□□□ -0.29
CLK1-211ENST00000481641 PMS2P5A8MQ11 134 aa13.25□□□□□ -0.29
CLK1-211ENST00000481641 MEOX2P50222 304 aa13.25□□□□□ -0.29
CLK1-211ENST00000481641 RRAS2P62070 204 aaPredicted RBP13.25□□□□□ -0.29
CLK1-211ENST00000481641 SPATA31B1PQ5VZV4 182 aa13.25□□□□□ -0.29
CLK1-211ENST00000481641 CYP2G1PQ6ZSU1 146 aa13.25□□□□□ -0.29
CLK1-211ENST00000481641 RNF182Q8N6D2 247 aa13.25□□□□□ -0.29
CLK1-211ENST00000481641 C7orf50Q9BRJ6 194 aaKnown RBP13.25□□□□□ -0.29
CLK1-211ENST00000481641 TRAV8-2A0A0B4J237 113 aa13.24□□□□□ -0.29
CLK1-211ENST00000481641 IL5P05113 134 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms