RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 IFNA7P01567 189 aa7.75□□□□□ -1.17
CD44-207ENST00000425428 SPP1P10451 314 aa7.75□□□□□ -1.17
CD44-207ENST00000425428 GATA2P23769 480 aaPredicted RBP7.75□□□□□ -1.17
CD44-207ENST00000425428 FHL3Q13643 280 aa7.75□□□□□ -1.17
CD44-207ENST00000425428 TMEM41BQ5BJD5 291 aa7.75□□□□□ -1.17
CD44-207ENST00000425428 LAMTOR1Q6IAA8 161 aa7.75□□□□□ -1.17
CD44-207ENST00000425428 GPR82Q96P67 336 aa7.75□□□□□ -1.17
CD44-207ENST00000425428 MRPL32Q9BYC8 188 aaKnown RBP7.75□□□□□ -1.17
CD44-207ENST00000425428 KRTAP3-3Q9BYR6 98 aa7.75□□□□□ -1.17
CD44-207ENST00000425428 KRTAP3-2Q9BYR7 98 aa7.75□□□□□ -1.17
CD44-207ENST00000425428 ACTR3CQ9C0K3 210 aaPredicted RBP7.75□□□□□ -1.17
CD44-207ENST00000425428 ARV1Q9H2C2 271 aa7.75□□□□□ -1.17
CD44-207ENST00000425428 CYTL1Q9NRR1 136 aa7.75□□□□□ -1.17
CD44-207ENST00000425428 MRPL27Q9P0M9 148 aaKnown RBP7.75□□□□□ -1.17
CD44-207ENST00000425428 DOK5Q9P104 306 aa7.75□□□□□ -1.17
CD44-207ENST00000425428 WI2-2373I1.2A0A1W2PRP0 233 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 PLP1P60201 277 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 PRR20EP86478 221 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 PRR20CP86479 221 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 PRR20DP86480 221 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 PRR20BP86481 221 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 PRR20AP86496 221 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 KRTAP21-3Q3LHN1 58 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 DPPA3Q6W0C5 159 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 TMEM182Q6ZP80 229 aaPredicted RBP7.74□□□□□ -1.17
CD44-207ENST00000425428 LINC00305Q7Z4B0 112 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 OR8I2Q8N0Y5 310 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 STXBP6Q8NFX7 210 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 OR10G4Q8NGN3 311 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 OR10G9Q8NGN4 311 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 OR10G7Q8NGN6 311 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 LRRC20Q8TCA0 184 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 DLX4Q92988 240 aaPredicted RBP7.74□□□□□ -1.17
CD44-207ENST00000425428 HELTA6NFD8 242 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 A8MWP6 167 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 ZNF207O43670 478 aaKnown RBP7.74□□□□□ -1.17
CD44-207ENST00000425428 RPL11P62913 178 aaKnown RBP7.74□□□□□ -1.17
CD44-207ENST00000425428 PAFAH1B2P68402 229 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 FAM78BQ5VT40 261 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 RCC1LQ96I51 464 aaKnown RBP7.74□□□□□ -1.17
CD44-207ENST00000425428 SLC25A22Q9H936 323 aa7.74□□□□□ -1.17
CD44-207ENST00000425428 ZMAT5Q9UDW3 170 aaKnown RBP7.74□□□□□ -1.17
CD44-207ENST00000425428 IGHV3OR16-8A0A075B7F1 116 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 IGHV7-4-1A0A0J9YVY3 117 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 ADARB2-AS1A8MUL3 147 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 SAP30O75446 220 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 RPL7P18124 248 aaKnown RBP7.73□□□□□ -1.17
CD44-207ENST00000425428 GALR1P47211 349 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 CDC34P49427 236 aaPredicted RBP7.73□□□□□ -1.17
CD44-207ENST00000425428 INSL3P51460 131 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 KHDC3LQ587J8 217 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 C1orf194Q5T5A4 169 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 HIST2H2BDQ6DRA6 164 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 RBPMS2Q6ZRY4 209 aaKnown RBP7.73□□□□□ -1.17
CD44-207ENST00000425428 BPIFA4PQ86YQ2 179 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 SPATA3Q8NHX4 192 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 RNF141Q8WVD5 230 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 TMED6Q8WW62 240 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 SH3BGRL3Q9H299 93 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 ZFAND3Q9H8U3 227 aa7.73□□□□□ -1.17
CD44-207ENST00000425428 TECRQ9NZ01 308 aaKnown RBP7.73□□□□□ -1.17
CD44-207ENST00000425428 C2orf70A6NJV1 201 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 ATF4P18848 351 aaPredicted RBP7.72□□□□□ -1.17
CD44-207ENST00000425428 CBLN1P23435 193 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 CRYBB3P26998 211 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 RAB14P61106 215 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 USF2Q15853 346 aaPredicted RBP7.72□□□□□ -1.17
CD44-207ENST00000425428 TM4SF20Q53R12 229 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 C9orf66Q5T8R8 295 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 FAM122CQ6P4D5 195 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 UNQ9165/PRO28630Q6UXU0 137 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 MDFIQ99750 246 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 SLC25A39Q9BZJ4 359 aaPredicted RBP7.72□□□□□ -1.17
CD44-207ENST00000425428 FUT9Q9Y231 359 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 BOLA1Q9Y3E2 137 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 COL6A5A8TX70 2615 aa7.72□□□□□ -1.17
CD44-207ENST00000425428 SEC14L6B5MCN3 397 aa7.71□□□□□ -1.17
CD44-207ENST00000425428 OR7C2O60412 319 aa7.71□□□□□ -1.17
CD44-207ENST00000425428 FOLR2P14207 255 aa7.71□□□□□ -1.17
CD44-207ENST00000425428 MEOX2P50222 304 aa7.71□□□□□ -1.17
CD44-207ENST00000425428 BLOC1S1P78537 153 aa7.71□□□□□ -1.17
CD44-207ENST00000425428 SAMD13Q5VXD3 122 aa7.71□□□□□ -1.17
CD44-207ENST00000425428 SHANK2-AS3Q9BTD1 123 aa7.71□□□□□ -1.17
CD44-207ENST00000425428 RHPN1-AS1Q9BWJ2 59 aa7.71□□□□□ -1.17
CD44-207ENST00000425428 UBQLN2Q9UHD9 624 aa7.71□□□□□ -1.17
CD44-207ENST00000425428 SMPXQ9UHP9 88 aa7.71□□□□□ -1.17
CD44-207ENST00000425428 CTXND1A0A1B0GTU2 59 aa7.71□□□□□ -1.18
CD44-207ENST00000425428 ZNF98A6NK75 572 aa7.71□□□□□ -1.18
CD44-207ENST00000425428 ZNF785A8K8V0 405 aa7.71□□□□□ -1.18
CD44-207ENST00000425428 DNASE2O00115 360 aaPredicted RBP7.71□□□□□ -1.18
CD44-207ENST00000425428 HBE1P02100 147 aa7.71□□□□□ -1.18
CD44-207ENST00000425428 C8orf88P0DMB2 117 aa7.71□□□□□ -1.18
CD44-207ENST00000425428 PRR31Q5SQ13 230 aa7.71□□□□□ -1.18
CD44-207ENST00000425428 PQLC2Q6ZP29 291 aa7.71□□□□□ -1.18
CD44-207ENST00000425428 IQCF2Q8IXL9 164 aa7.71□□□□□ -1.18
CD44-207ENST00000425428 LINC00482Q8N8I6 264 aa7.71□□□□□ -1.18
CD44-207ENST00000425428 FAM213BQ8TBF2 198 aa7.71□□□□□ -1.18
CD44-207ENST00000425428 SIGLEC8Q9NYZ4 499 aa7.71□□□□□ -1.18
CD44-207ENST00000425428 IGHV3-49A0A0A0MS15 119 aa7.7□□□□□ -1.18
CD44-207ENST00000425428 ZNF705EA8MWA4 302 aaPredicted RBP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms