RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 ZCCHC24Q8N2G6 241 aaKnown RBP9.05□□□□□ -0.96
HPS4-202ENST00000398145 C11orf52Q96A22 123 aa9.05□□□□□ -0.96
HPS4-202ENST00000398145 IGHV3OR16-8A0A075B7F1 116 aa9.05□□□□□ -0.96
HPS4-202ENST00000398145 A0A1B0GWJ7 208 aa9.05□□□□□ -0.96
HPS4-202ENST00000398145 APOMO95445 188 aa9.05□□□□□ -0.96
HPS4-202ENST00000398145 PPP1R17O96001 155 aa9.05□□□□□ -0.96
HPS4-202ENST00000398145 TRGV9Q99603 122 aa9.05□□□□□ -0.96
HPS4-202ENST00000398145 MCRIP2Q9BUT9 160 aaKnown RBP9.05□□□□□ -0.96
HPS4-202ENST00000398145 TRAV8-1A0A0A6YYK1 113 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 D6R8Y8 96 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 NDUFA3O95167 84 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 IGHV1-46P01743 117 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 STPG4Q8N801 248 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 TMEM190Q8WZ59 177 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 ZNF479Q96JC4 524 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 ASCL2Q99929 193 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 FRMPD3Q5JV73 1810 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 LOC105371242A0A075B767 164 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 IGHV3-23P01764 117 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 PDLIM4P50479 330 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 TMEM249Q2WGJ8 235 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 DENND4AQ7Z401 1863 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 ITGB1BP1O14713 200 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 IGKV1-16P04430 117 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 SMAGPQ0VAQ4 97 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 OCIAD2Q56VL3 154 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 CST9LQ9H4G1 147 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 TMEM14BQ9NUH8 114 aa9.04□□□□□ -0.96
HPS4-202ENST00000398145 IGHV3-49A0A0A0MS15 119 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 IGLL1P15814 213 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 APOBEC3AP31941 199 aaPredicted RBP9.03□□□□□ -0.96
HPS4-202ENST00000398145 BSPH1Q075Z2 132 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 SLAQ13239 276 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 BCL6BQ8N143 479 aaPredicted RBP9.03□□□□□ -0.96
HPS4-202ENST00000398145 SYT8Q8NBV8 401 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 CACNA1BQ00975 2339 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 GGTLC3B5MD39 225 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 CCL21O00585 134 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 TOMM40O96008 361 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 IGKCP01834 107 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 PF4V1P10720 104 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 PRSS8Q16651 343 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 ZNF329Q86UD4 541 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 SLC25A39Q9BZJ4 359 aaPredicted RBP9.03□□□□□ -0.96
HPS4-202ENST00000398145 YLPM1P49750 1951 aaKnown RBP9.03□□□□□ -0.96
HPS4-202ENST00000398145 ARPC1AQ92747 370 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 CHD3Q12873 2000 aaKnown RBP9.03□□□□□ -0.96
HPS4-202ENST00000398145 NPIPB5A8MRT5 1133 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 EEF1AKMT3Q96AZ1 226 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 PLSCR4Q9NRQ2 329 aa9.03□□□□□ -0.96
HPS4-202ENST00000398145 NBR2O15453 112 aa9.02□□□□□ -0.96
HPS4-202ENST00000398145 LINC01559Q495D7 138 aa9.02□□□□□ -0.96
HPS4-202ENST00000398145 Q6ZSR3 168 aa9.02□□□□□ -0.96
HPS4-202ENST00000398145 SMPXQ9UHP9 88 aa9.02□□□□□ -0.96
HPS4-202ENST00000398145 KIAA1671Q9BY89 1806 aa9.02□□□□□ -0.97
HPS4-202ENST00000398145 SP9P0CG40 484 aa9.02□□□□□ -0.97
HPS4-202ENST00000398145 KIR3DS1Q14943 382 aa9.02□□□□□ -0.97
HPS4-202ENST00000398145 PAPPA-AS1Q5QFB9 102 aa9.02□□□□□ -0.97
HPS4-202ENST00000398145 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.02□□□□□ -0.973e-7■■■■□ 19.5
HPS4-202ENST00000398145 SH2D7A6NKC9 451 aaPredicted RBP9.02□□□□□ -0.97
HPS4-202ENST00000398145 NPIPB6E9PJ23 425 aa9.02□□□□□ -0.97
HPS4-202ENST00000398145 H0YJW9 148 aa9.02□□□□□ -0.97
HPS4-202ENST00000398145 SPOCK3Q9BQ16 436 aa9.02□□□□□ -0.97
HPS4-202ENST00000398145 VKORC1Q9BQB6 163 aa9.02□□□□□ -0.97
HPS4-202ENST00000398145 IGHV3-66A0A0C4DH42 116 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 F2Z2F3 143 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 ATP5G2Q06055 141 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 FAM74A4Q5TZK3 123 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 EBLN2Q6P2I7 272 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 LYZL1Q6UWQ5 148 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 FAM231DQ6ZW35 169 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 WDR86Q86TI4 376 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 SPACA3Q8IXA5 215 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 TMEM105Q8N8V8 129 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 TNFRSF14Q92956 283 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 BEX4Q9NWD9 120 aaPredicted RBP9.01□□□□□ -0.97
HPS4-202ENST00000398145 PPIFP30405 207 aaKnown RBP9.01□□□□□ -0.97
HPS4-202ENST00000398145 ASIPP42127 132 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 SRSF1Q07955 248 aaKnown RBP eCLIP9.01□□□□□ -0.97
HPS4-202ENST00000398145 FAM159AQ6UWV7 190 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 GFRA4Q9GZZ7 299 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 FAM231BA6NCW3 169 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 NCR2O95944 276 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 IGKV3-15P01624 115 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 PRB3Q04118 309 aaPredicted RBP9.01□□□□□ -0.97
HPS4-202ENST00000398145 Q5PR19 223 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 SFTA2Q6UW10 78 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 VCX2Q9H322 139 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 UBTD1Q9HAC8 227 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 EVI2AP22794 236 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 GAGE13Q4V321 117 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 RCHY1Q96PM5 261 aa9.01□□□□□ -0.97
HPS4-202ENST00000398145 SMIM27A0A1W2PRY6 76 aa9□□□□□ -0.97
HPS4-202ENST00000398145 CT83Q5H943 113 aa9□□□□□ -0.97
HPS4-202ENST00000398145 COL6A6A6NMZ7 2263 aa9□□□□□ -0.97
HPS4-202ENST00000398145 IGHV2-26A0A0B4J1V2 119 aa9□□□□□ -0.97
HPS4-202ENST00000398145 ZNF503-AS2A6NEH8 195 aa9□□□□□ -0.97
HPS4-202ENST00000398145 PRB4P10163 310 aaPredicted RBP9□□□□□ -0.97
HPS4-202ENST00000398145 MDS2Q8NDY4 140 aa9□□□□□ -0.97
HPS4-202ENST00000398145 SLC25A15Q9Y619 301 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms