RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 KLK10O43240 276 aa14.79□□□□□ -0.04
CCDC3-201ENST00000378825 GLRXP35754 106 aa14.79□□□□□ -0.04
CCDC3-201ENST00000378825 ATP5L2Q7Z4Y8 100 aa14.79□□□□□ -0.04
CCDC3-201ENST00000378825 TEX45Q8NA69 505 aa14.79□□□□□ -0.04
CCDC3-201ENST00000378825 OSR1Q8TAX0 266 aaPredicted RBP14.79□□□□□ -0.04
CCDC3-201ENST00000378825 PRSS22Q9GZN4 317 aa14.79□□□□□ -0.04
CCDC3-201ENST00000378825 ZNF835Q9Y2P0 537 aa14.79□□□□□ -0.04
CCDC3-201ENST00000378825 SVEP1Q4LDE5 3571 aa14.79□□□□□ -0.04
CCDC3-201ENST00000378825 APOA2P02652 100 aa14.79□□□□□ -0.04
CCDC3-201ENST00000378825 SLC25A34Q6PIV7 304 aa14.78□□□□□ -0.04
CCDC3-201ENST00000378825 ZADH2Q8N4Q0 377 aa14.78□□□□□ -0.04
CCDC3-201ENST00000378825 TMUB1Q9BVT8 246 aa14.78□□□□□ -0.04
CCDC3-201ENST00000378825 ST20Q9HBF5 79 aa14.78□□□□□ -0.04
CCDC3-201ENST00000378825 C19orf71A6NCJ1 209 aa14.78□□□□□ -0.04
CCDC3-201ENST00000378825 OR5AN1Q8NGI8 311 aa14.78□□□□□ -0.04
CCDC3-201ENST00000378825 KLF12Q9Y4X4 402 aa14.78□□□□□ -0.04
CCDC3-201ENST00000378825 TRAV30A0A087WSZ9 112 aa14.77□□□□□ -0.04
CCDC3-201ENST00000378825 IGLV2-23P01705 113 aa14.77□□□□□ -0.04
CCDC3-201ENST00000378825 SAPCD1Q5SSQ6 148 aa14.77□□□□□ -0.04
CCDC3-201ENST00000378825 IGLV3-9A0A075B6K5 115 aa14.77□□□□□ -0.05
CCDC3-201ENST00000378825 A8MWL6 223 aa14.77□□□□□ -0.05
CCDC3-201ENST00000378825 EXOC3-AS1Q8N2X6 119 aa14.77□□□□□ -0.05
CCDC3-201ENST00000378825 Q9H3A6 140 aa14.77□□□□□ -0.05
CCDC3-201ENST00000378825 LINC00574Q9H8X3 128 aa14.77□□□□□ -0.05
CCDC3-201ENST00000378825 FAM215AQ9Y5M1 114 aa14.77□□□□□ -0.05
CCDC3-201ENST00000378825 hADV38S2A0JD32 116 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 NCR2O95944 276 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 S100A7P31151 101 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 NCOR1P1Q9H4R4 102 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 RAB9BQ9NP90 201 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 SCRT2Q9NQ03 307 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 TRAV8-6A0A0B4J262 113 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 TCRAP04437 139 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 MRGPRG-AS1Q2M3A8 158 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 THAP8Q8NA92 274 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 TMEM167AQ8TBQ9 72 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 CST9LQ9H4G1 147 aa14.76□□□□□ -0.05
CCDC3-201ENST00000378825 ZNF785A8K8V0 405 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 CHEK1O14757 476 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 LTAP01374 205 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 FAM106CPP0CH98 169 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 CNTFRP26992 372 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 GATA4P43694 442 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 ATP5IP56385 69 aaPredicted RBP14.75□□□□□ -0.05
CCDC3-201ENST00000378825 FAM106AQ4KMX7 169 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 DEFB125Q8N687 156 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 OR10X1Q8NGY0 326 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 H1FXQ92522 213 aaKnown RBP14.75□□□□□ -0.05
CCDC3-201ENST00000378825 SSUH2Q9Y2M2 353 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 OVOL3O00110 214 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 GP9P14770 177 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 RHOGP84095 191 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 TMEM200BQ69YZ2 307 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 CHRDL1Q9BU40 450 aa14.75□□□□□ -0.05
CCDC3-201ENST00000378825 CEP295Q9C0D2 2601 aa14.74□□□□□ -0.05
CCDC3-201ENST00000378825 MBD3L4A6NDZ8 208 aaPredicted RBP14.74□□□□□ -0.05
CCDC3-201ENST00000378825 MBD3L3A6NE82 208 aaPredicted RBP14.74□□□□□ -0.05
CCDC3-201ENST00000378825 MBD3L5A6NJ08 208 aaPredicted RBP14.74□□□□□ -0.05
CCDC3-201ENST00000378825 PSG9Q00887 426 aa14.74□□□□□ -0.05
CCDC3-201ENST00000378825 FAM27E3Q08E93 113 aa14.74□□□□□ -0.05
CCDC3-201ENST00000378825 RBPMS2Q6ZRY4 209 aaKnown RBP14.74□□□□□ -0.05
CCDC3-201ENST00000378825 MBD3L2Q8NHZ7 208 aaPredicted RBP14.74□□□□□ -0.05
CCDC3-201ENST00000378825 PERPQ96FX8 193 aa14.74□□□□□ -0.05
CCDC3-201ENST00000378825 MALRD1Q5VYJ5 2156 aa14.74□□□□□ -0.05
CCDC3-201ENST00000378825 APC2O95996 2303 aa14.74□□□□□ -0.05
CCDC3-201ENST00000378825 COL8A1P27658 744 aa14.74□□□□□ -0.05
CCDC3-201ENST00000378825 PRNTQ86SH4 94 aa14.74□□□□□ -0.05
CCDC3-201ENST00000378825 OR4C13Q8NGP0 309 aa14.74□□□□□ -0.05
CCDC3-201ENST00000378825 LINC00312Q9Y6C7 94 aa14.74□□□□□ -0.05
CCDC3-201ENST00000378825 ENSAO43768 121 aaKnown RBP14.73□□□□□ -0.05
CCDC3-201ENST00000378825 CHCHD1Q96BP2 118 aaKnown RBP14.73□□□□□ -0.05
CCDC3-201ENST00000378825 DAZAP1Q96EP5 407 aaKnown RBP14.73□□□□□ -0.05
CCDC3-201ENST00000378825 TMEM191AQ9H0A3 160 aa14.73□□□□□ -0.05
CCDC3-201ENST00000378825 TM4SF5O14894 197 aa14.73□□□□□ -0.05
CCDC3-201ENST00000378825 APOHP02749 345 aaPredicted RBP14.73□□□□□ -0.05
CCDC3-201ENST00000378825 FXYD7P58549 80 aa14.73□□□□□ -0.05
CCDC3-201ENST00000378825 COTL1Q14019 142 aa14.73□□□□□ -0.05
CCDC3-201ENST00000378825 LYPD2Q6UXB3 125 aa14.73□□□□□ -0.05
CCDC3-201ENST00000378825 GOLT1AQ6ZVE7 132 aa14.73□□□□□ -0.05
CCDC3-201ENST00000378825 RELNP78509 3460 aa14.73□□□□□ -0.05
CCDC3-201ENST00000378825 ARMS2P0C7Q2 107 aa14.72□□□□□ -0.05
CCDC3-201ENST00000378825 C5orf17Q8NAS9 161 aa14.72□□□□□ -0.05
CCDC3-201ENST00000378825 NAA38Q9BRA0 125 aaKnown RBP14.72□□□□□ -0.05
CCDC3-201ENST00000378825 VPS25Q9BRG1 176 aa14.72□□□□□ -0.05
CCDC3-201ENST00000378825 DCHS2Q6V1P9 2916 aa14.72□□□□□ -0.05
CCDC3-201ENST00000378825 OCIAD2Q56VL3 154 aa14.72□□□□□ -0.05
CCDC3-201ENST00000378825 NEU4Q8WWR8 484 aaPredicted RBP14.72□□□□□ -0.05
CCDC3-201ENST00000378825 C17orf77Q96MU5 243 aa14.72□□□□□ -0.05
CCDC3-201ENST00000378825 MAP1LC3CQ9BXW4 147 aa14.72□□□□□ -0.05
CCDC3-201ENST00000378825 HSBP1L1C9JCN9 74 aa14.72□□□□□ -0.05
CCDC3-201ENST00000378825 CEACAM4O75871 244 aa14.72□□□□□ -0.05
CCDC3-201ENST00000378825 LOXL1Q08397 574 aaPredicted RBP14.72□□□□□ -0.05
CCDC3-201ENST00000378825 TIMM23BQ5SRD1 257 aa14.72□□□□□ -0.05
CCDC3-201ENST00000378825 TPPP3Q9BW30 176 aa14.72□□□□□ -0.05
CCDC3-201ENST00000378825 LRBAP50851 2863 aa14.71□□□□□ -0.05
CCDC3-201ENST00000378825 C2orf91Q6ZV80 131 aa14.71□□□□□ -0.05
CCDC3-201ENST00000378825 Q86TA4 180 aa14.71□□□□□ -0.05
CCDC3-201ENST00000378825 ZGRF1Q86YA3 2104 aa14.71□□□□□ -0.05
CCDC3-201ENST00000378825 TMEM116Q8NCL8 245 aa14.71□□□□□ -0.05
CCDC3-201ENST00000378825 C1RLQ9NZP8 487 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms