RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 GTF2A1P52655 376 aaPredicted RBP3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 RBM11P57052 281 aaKnown RBP3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 CACNG7P62955 275 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 PITPNAQ00169 270 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 DEFA5Q01523 94 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 Q3ZCU0 254 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 MORN2Q502X0 79 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 SYT6Q5T7P8 510 aaPredicted RBP3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 XAF1Q6GPH4 301 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 CD200R1LQ6Q8B3 271 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 ZNF833PQ6ZTB9 187 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 LINC00336Q6ZUF6 198 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 GID4Q8IVV7 300 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 SGPP2Q8IWX5 399 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 DEFB125Q8N687 156 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 LFNGQ8NES3 379 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 OR4K15Q8NH41 348 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 OR52N1Q8NH53 320 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 TNFAIP8L1Q8WVP5 186 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 SCGB3A2Q96PL1 93 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 CIB1Q99828 191 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 PDCD1LG2Q9BQ51 273 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 TMED9Q9BVK6 235 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 FBXL15Q9H469 300 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 ARL2BPQ9Y2Y0 163 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 YTHDF2Q9Y5A9 579 aaKnown RBP3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 HERC1Q15751 4861 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 PKD1P98161 4303 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 HSPG2P98160 4391 aa3.39□□□□□ -1.87
RNU4-39P-201ENST00000362455 KIAA2026Q5HYC2 2103 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 IGKV2D-24A0A075B6R9 120 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 TMEM223A0PJW6 202 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 OR7C1O76099 320 aaPredicted RBP3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 FADS2O95864 444 aaKnown RBP3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 GLAP06280 429 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 CRYGCP07315 174 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 HTR1AP08908 422 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 SAA2P0DJI9 122 aaPredicted RBP3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 BMI1P35226 326 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 TPPP2P59282 170 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 TAS2R46P59540 309 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 RPL23P62829 140 aaKnown RBP3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 TMED1Q13445 227 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 RSU1Q15404 277 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 RBMY1FQ15415 496 aaKnown RBP3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 AKIRIN2Q53H80 203 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 ACTBL2Q562R1 376 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 RPL39P5Q59GN2 51 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 ZNF660Q6AZW8 331 aaPredicted RBP3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 OR5D14Q8NGL3 314 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 DNAJC9Q8WXX5 260 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 TMEM106AQ96A25 262 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 FLYWCH2Q96CP2 140 aaKnown RBP3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 RDH12Q96NR8 316 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 AGMATQ9BSE5 352 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 THTPAQ9BU02 230 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 SAMD10Q9BYL1 202 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 GABARAPL1Q9H0R8 117 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 TUBA4BQ9H853 241 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 TAF9BQ9HBM6 251 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 TAS2R4Q9NYW5 299 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 POMPQ9Y244 141 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 DSCAML1Q8TD84 2053 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 TNCP24821 2201 aa3.38□□□□□ -1.87
RNU4-39P-201ENST00000362455 A0A1W2PPV4 95 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 DAPL1A0PJW8 107 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 ZNF705GA8MUZ8 300 aaPredicted RBP3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 G3V2T6 193 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 H0YJW9 148 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 AIPO00170 330 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 ZNF324O75467 553 aaPredicted RBP3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 SC5DO75845 299 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 SLC22A5O76082 557 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 MBP02144 154 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 APCSP02743 223 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 TRGV3P03979 118 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 IGKV1-16P04430 117 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 OCM2P0CE71 109 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 OCMP0CE72 109 aaPredicted RBP3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 IL3RAP26951 378 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 LINC00483Q53H64 154 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 Q5W150 140 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 UNQ5815/PRO19632Q6UWF5 114 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 FAM131AQ6UXB0 335 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 SPATA24Q86W54 205 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 OR5T1Q8NG75 326 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 MRPL30Q8TCC3 161 aaKnown RBP3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 NARS2Q96I59 477 aaKnown RBP3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 OR2S2Q9NQN1 319 aa3.37□□□□□ -1.87
RNU4-39P-201ENST00000362455 LRP1BQ9NZR2 4599 aa3.36□□□□□ -1.87
RNU4-39P-201ENST00000362455 TRAV8-7A0A075B6U6 113 aa3.36□□□□□ -1.87
RNU4-39P-201ENST00000362455 H0Y980 276 aa3.36□□□□□ -1.87
RNU4-39P-201ENST00000362455 BPY2O14599 106 aa3.36□□□□□ -1.87
RNU4-39P-201ENST00000362455 SOCS1O15524 211 aa3.36□□□□□ -1.87
RNU4-39P-201ENST00000362455 RBFOX2O43251 390 aaKnown RBP eCLIP3.36□□□□□ -1.87
RNU4-39P-201ENST00000362455 ZNF207O43670 478 aaKnown RBP3.36□□□□□ -1.87
RNU4-39P-201ENST00000362455 YPEL1O60688 119 aa3.36□□□□□ -1.87
RNU4-39P-201ENST00000362455 DCTN3O75935 186 aa3.36□□□□□ -1.87
RNU4-39P-201ENST00000362455 FAM107AO95990 144 aa3.36□□□□□ -1.87
RNU4-39P-201ENST00000362455 CA2P00918 260 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms