RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 C16orf95Q9H693 158 aa14.36□□□□□ -0.11
CLN3-206ENST00000360019 TECRQ9NZ01 308 aaKnown RBP14.36□□□□□ -0.11
CLN3-206ENST00000360019 MAST4O15021 2626 aa14.35□□□□□ -0.11
CLN3-206ENST00000360019 ANKRD34BA5PLL1 514 aa14.35□□□□□ -0.11
CLN3-206ENST00000360019 HAGHQ16775 308 aa14.35□□□□□ -0.11
CLN3-206ENST00000360019 TOMM20LQ6UXN7 152 aa14.35□□□□□ -0.11
CLN3-206ENST00000360019 RARRES2Q99969 163 aa14.35□□□□□ -0.11
CLN3-206ENST00000360019 SLC25A39Q9BZJ4 359 aaPredicted RBP14.35□□□□□ -0.11
CLN3-206ENST00000360019 ZFAND3Q9H8U3 227 aa14.35□□□□□ -0.11
CLN3-206ENST00000360019 TCF21O43680 179 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 CD5P06127 495 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 TAS2R45P59539 299 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 PMS2P11Q13670 270 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 UQCC3Q6UW78 93 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 LINC01006Q8NI28 216 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 WIPF2Q8TF74 440 aaPredicted RBP14.34□□□□□ -0.11
CLN3-206ENST00000360019 OR5B12Q96R08 314 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 EIF5A2Q9GZV4 153 aaKnown RBP14.34□□□□□ -0.11
CLN3-206ENST00000360019 TEP1Q99973 2627 aaKnown RBP14.34□□□□□ -0.11
CLN3-206ENST00000360019 RBFOX3A6NFN3 312 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 C9JQL5 133 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 GCHFRP30047 84 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 KHDC3LQ587J8 217 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 TCTEX1D4Q5JR98 221 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 LEMD1Q68G75 181 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 OR5AU1Q8NGC0 362 aa14.34□□□□□ -0.11
CLN3-206ENST00000360019 IGHV3OR16-8A0A075B7F1 116 aa14.33□□□□□ -0.12
CLN3-206ENST00000360019 BMPR1BO00238 502 aa14.33□□□□□ -0.12
CLN3-206ENST00000360019 OR7C2O60412 319 aa14.33□□□□□ -0.12
CLN3-206ENST00000360019 PSMB3P49720 205 aa14.33□□□□□ -0.12
CLN3-206ENST00000360019 SRSF2Q01130 221 aaKnown RBP14.33□□□□□ -0.12
CLN3-206ENST00000360019 RELQ04864 619 aaPredicted RBP14.33□□□□□ -0.12
CLN3-206ENST00000360019 PQLC2Q6ZP29 291 aa14.33□□□□□ -0.12
CLN3-206ENST00000360019 C2CD3Q4AC94 2353 aa14.33□□□□□ -0.12
CLN3-206ENST00000360019 H3BRN7 92 aa14.32□□□□□ -0.12
CLN3-206ENST00000360019 BCL2P10415 239 aa14.32□□□□□ -0.12
CLN3-206ENST00000360019 UBE2E2Q96LR5 201 aa14.32□□□□□ -0.12
CLN3-206ENST00000360019 PEF1Q9UBV8 284 aaKnown RBP14.32□□□□□ -0.12
CLN3-206ENST00000360019 LOC102723971A0A1B0GUV8 181 aa14.31□□□□□ -0.12
CLN3-206ENST00000360019 I3L521 148 aa14.31□□□□□ -0.12
CLN3-206ENST00000360019 NDUFA7O95182 113 aa14.31□□□□□ -0.12
CLN3-206ENST00000360019 ICAM4Q14773 271 aa14.31□□□□□ -0.12
CLN3-206ENST00000360019 ZNF506Q5JVG8 444 aa14.31□□□□□ -0.12
CLN3-206ENST00000360019 SHANK2-AS3Q9BTD1 123 aa14.31□□□□□ -0.12
CLN3-206ENST00000360019 TREM1Q9NP99 234 aa14.31□□□□□ -0.12
CLN3-206ENST00000360019 CLPSL1A2RUU4 121 aa14.31□□□□□ -0.12
CLN3-206ENST00000360019 OR10J4P0C629 311 aa14.31□□□□□ -0.12
CLN3-206ENST00000360019 PYYP10082 97 aa14.31□□□□□ -0.12
CLN3-206ENST00000360019 FAM209BQ5JX69 171 aa14.31□□□□□ -0.12
CLN3-206ENST00000360019 IFNA1P01562 189 aa14.3□□□□□ -0.12
CLN3-206ENST00000360019 LGALS1P09382 135 aaKnown RBP14.3□□□□□ -0.12
CLN3-206ENST00000360019 RXFP4Q8TDU9 374 aa14.3□□□□□ -0.12
CLN3-206ENST00000360019 MANBALQ9NQG1 85 aa14.3□□□□□ -0.12
CLN3-206ENST00000360019 JMJD1CQ15652 2540 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 PAGE4O60829 102 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 PEA15Q15121 130 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 UNQ9165/PRO28630Q6UXU0 137 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 SUN5Q8TC36 379 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 NARS2Q96I59 477 aaKnown RBP14.29□□□□□ -0.12
CLN3-206ENST00000360019 PAXXQ9BUH6 204 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 OR51M1Q9H341 326 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 TMEM167BQ9NRX6 74 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 RABAC1Q9UI14 185 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 ZNF98A6NK75 572 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 NDUFA4O00483 81 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 GGCTO75223 188 aaKnown RBP14.29□□□□□ -0.12
CLN3-206ENST00000360019 GP9P14770 177 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 PPT1P50897 306 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 UBE2G2P60604 165 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 UBE2L3P68036 154 aaKnown RBP14.29□□□□□ -0.12
CLN3-206ENST00000360019 HIST2H2BDQ6DRA6 164 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 C18orf65Q6ZTR6 163 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 FXYD5Q96DB9 178 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 LINC00052Q96N35 136 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 VAX2Q9UIW0 290 aa14.29□□□□□ -0.12
CLN3-206ENST00000360019 STXBP6Q8NFX7 210 aa14.28□□□□□ -0.12
CLN3-206ENST00000360019 TMEM218A2RU14 115 aa14.27□□□□□ -0.12
CLN3-206ENST00000360019 S100A1P23297 94 aa14.27□□□□□ -0.12
CLN3-206ENST00000360019 C20orf24Q9BUV8 137 aa14.27□□□□□ -0.12
CLN3-206ENST00000360019 SMDT1Q9H4I9 107 aa14.27□□□□□ -0.12
CLN3-206ENST00000360019 YTHDF2Q9Y5A9 579 aaKnown RBP14.27□□□□□ -0.12
CLN3-206ENST00000360019 HSPB1P04792 205 aaKnown RBP14.27□□□□□ -0.13
CLN3-206ENST00000360019 SNRPCP09234 159 aaKnown RBP14.27□□□□□ -0.13
CLN3-206ENST00000360019 ADCYAP1P18509 176 aa14.27□□□□□ -0.13
CLN3-206ENST00000360019 CDX1P47902 265 aaPredicted RBP14.27□□□□□ -0.13
CLN3-206ENST00000360019 CD81P60033 236 aa14.27□□□□□ -0.13
CLN3-206ENST00000360019 MEF2BQ02080 365 aaPredicted RBP14.27□□□□□ -0.13
CLN3-206ENST00000360019 S100A7AQ86SG5 101 aa14.27□□□□□ -0.13
CLN3-206ENST00000360019 IGHV4OR15-8A0A075B7B6 117 aa14.26□□□□□ -0.13
CLN3-206ENST00000360019 A0A087WW49 117 aa14.26□□□□□ -0.13
CLN3-206ENST00000360019 ZNF207O43670 478 aaKnown RBP14.26□□□□□ -0.13
CLN3-206ENST00000360019 SRP19P09132 144 aaKnown RBP14.26□□□□□ -0.13
CLN3-206ENST00000360019 SFTA3P0C7M3 94 aa14.26□□□□□ -0.13
CLN3-206ENST00000360019 ATP5G3P48201 142 aa14.26□□□□□ -0.13
CLN3-206ENST00000360019 OR4F5Q8NH21 305 aa14.26□□□□□ -0.13
CLN3-206ENST00000360019 TMEM190Q8WZ59 177 aa14.26□□□□□ -0.13
CLN3-206ENST00000360019 TMEM14CQ9P0S9 112 aa14.26□□□□□ -0.13
CLN3-206ENST00000360019 FAM74A7A6NL05 159 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 HAX1O00165 279 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 MRPS12O15235 138 aaKnown RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms