RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 FAM167A-AS1Q96KT0 104 aa14.46□□□□□ -0.09
CLN3-204ENST00000357857 LINC00052Q96N35 136 aa14.46□□□□□ -0.09
CLN3-204ENST00000357857 SMDT1Q9H4I9 107 aa14.46□□□□□ -0.09
CLN3-204ENST00000357857 PUS1Q9Y606 427 aaKnown RBP eCLIP14.46□□□□□ -0.09
CLN3-204ENST00000357857 TMEM218A2RU14 115 aa14.46□□□□□ -0.1
CLN3-204ENST00000357857 IGHV3-11P01762 117 aa14.46□□□□□ -0.1
CLN3-204ENST00000357857 CRYBA1P05813 215 aa14.46□□□□□ -0.1
CLN3-204ENST00000357857 ELANEP08246 267 aa14.46□□□□□ -0.1
CLN3-204ENST00000357857 ZP3P21754 424 aa14.46□□□□□ -0.1
CLN3-204ENST00000357857 FOXE3Q13461 319 aa14.46□□□□□ -0.1
CLN3-204ENST00000357857 RXFP4Q8TDU9 374 aa14.46□□□□□ -0.1
CLN3-204ENST00000357857 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.45□□□□□ -0.1
CLN3-204ENST00000357857 TAGLN2P37802 199 aaKnown RBP14.45□□□□□ -0.1
CLN3-204ENST00000357857 ZNF503Q96F45 646 aa14.45□□□□□ -0.1
CLN3-204ENST00000357857 JMJD8Q96S16 334 aa14.45□□□□□ -0.1
CLN3-204ENST00000357857 SLC25A39Q9BZJ4 359 aaPredicted RBP14.45□□□□□ -0.1
CLN3-204ENST00000357857 VAX2Q9UIW0 290 aa14.45□□□□□ -0.1
CLN3-204ENST00000357857 PPP5D1E7EU14 171 aa14.44□□□□□ -0.1
CLN3-204ENST00000357857 ARL3P36405 182 aa14.44□□□□□ -0.1
CLN3-204ENST00000357857 RELQ04864 619 aaPredicted RBP14.44□□□□□ -0.1
CLN3-204ENST00000357857 USF2Q15853 346 aaPredicted RBP14.44□□□□□ -0.1
CLN3-204ENST00000357857 ZNF343Q6P1L6 599 aa14.44□□□□□ -0.1
CLN3-204ENST00000357857 OR4X2Q8NGF9 303 aa14.44□□□□□ -0.1
CLN3-204ENST00000357857 ZNF414Q96IQ9 312 aa14.44□□□□□ -0.1
CLN3-204ENST00000357857 TMEM167BQ9NRX6 74 aa14.44□□□□□ -0.1
CLN3-204ENST00000357857 IGHV3-35A0A0C4DH35 117 aa14.44□□□□□ -0.1
CLN3-204ENST00000357857 PAGE4O60829 102 aa14.44□□□□□ -0.1
CLN3-204ENST00000357857 HSPB1P04792 205 aaKnown RBP14.44□□□□□ -0.1
CLN3-204ENST00000357857 S100A7AQ86SG5 101 aa14.44□□□□□ -0.1
CLN3-204ENST00000357857 HIVEP1P15822 2718 aa14.44□□□□□ -0.1
CLN3-204ENST00000357857 H3BRN7 92 aa14.43□□□□□ -0.1
CLN3-204ENST00000357857 TRBV12-3P01733 135 aa14.43□□□□□ -0.1
CLN3-204ENST00000357857 RPLP1P05386 114 aaKnown RBP14.43□□□□□ -0.1
CLN3-204ENST00000357857 SFTA3P0C7M3 94 aa14.43□□□□□ -0.1
CLN3-204ENST00000357857 KIAA0141Q14154 515 aaPredicted RBP14.43□□□□□ -0.1
CLN3-204ENST00000357857 TOMM20LQ6UXN7 152 aa14.43□□□□□ -0.1
CLN3-204ENST00000357857 STXBP6Q8NFX7 210 aa14.43□□□□□ -0.1
CLN3-204ENST00000357857 SHANK2-AS3Q9BTD1 123 aa14.43□□□□□ -0.1
CLN3-204ENST00000357857 PAXXQ9BUH6 204 aa14.43□□□□□ -0.1
CLN3-204ENST00000357857 OR51M1Q9H341 326 aa14.43□□□□□ -0.1
CLN3-204ENST00000357857 BMPR1BO00238 502 aa14.42□□□□□ -0.1
CLN3-204ENST00000357857 SRP19P09132 144 aaKnown RBP14.42□□□□□ -0.1
CLN3-204ENST00000357857 OR10J4P0C629 311 aa14.42□□□□□ -0.1
CLN3-204ENST00000357857 UBE2G2P60604 165 aa14.42□□□□□ -0.1
CLN3-204ENST00000357857 FAM209BQ5JX69 171 aa14.42□□□□□ -0.1
CLN3-204ENST00000357857 RNF152Q8N8N0 203 aa14.42□□□□□ -0.1
CLN3-204ENST00000357857 SLC35B3Q9H1N7 401 aa14.42□□□□□ -0.1
CLN3-204ENST00000357857 ZFAND3Q9H8U3 227 aa14.42□□□□□ -0.1
CLN3-204ENST00000357857 UBE2L3P68036 154 aaKnown RBP14.41□□□□□ -0.1
CLN3-204ENST00000357857 MEF2BQ02080 365 aaPredicted RBP14.41□□□□□ -0.1
CLN3-204ENST00000357857 LEMD1Q68G75 181 aa14.41□□□□□ -0.1
CLN3-204ENST00000357857 SUN5Q8TC36 379 aa14.41□□□□□ -0.1
CLN3-204ENST00000357857 MYOZ3Q8TDC0 251 aa14.41□□□□□ -0.1
CLN3-204ENST00000357857 RABAC1Q9UI14 185 aa14.41□□□□□ -0.1
CLN3-204ENST00000357857 F8W036 122 aa14.41□□□□□ -0.1
CLN3-204ENST00000357857 PYYP10082 97 aa14.41□□□□□ -0.1
CLN3-204ENST00000357857 KLHDC1Q8N7A1 406 aa14.41□□□□□ -0.1
CLN3-204ENST00000357857 ADCYAP1P18509 176 aa14.4□□□□□ -0.1
CLN3-204ENST00000357857 CST9LP1Q5W188 147 aa14.4□□□□□ -0.1
CLN3-204ENST00000357857 OR5B12Q96R08 314 aa14.4□□□□□ -0.1
CLN3-204ENST00000357857 SEC11CQ9BY50 192 aa14.4□□□□□ -0.1
CLN3-204ENST00000357857 PEF1Q9UBV8 284 aaKnown RBP14.4□□□□□ -0.1
CLN3-204ENST00000357857 IGHV3OR16-8A0A075B7F1 116 aa14.39□□□□□ -0.11
CLN3-204ENST00000357857 ZNF98A6NK75 572 aa14.39□□□□□ -0.11
CLN3-204ENST00000357857 C11orf94C9JXX5 98 aa14.39□□□□□ -0.11
CLN3-204ENST00000357857 S100A7P31151 101 aa14.39□□□□□ -0.11
CLN3-204ENST00000357857 CD81P60033 236 aa14.39□□□□□ -0.11
CLN3-204ENST00000357857 FXYD5Q96DB9 178 aa14.39□□□□□ -0.11
CLN3-204ENST00000357857 C16orf95Q9H693 158 aa14.39□□□□□ -0.11
CLN3-204ENST00000357857 YTHDF2Q9Y5A9 579 aaKnown RBP14.39□□□□□ -0.11
CLN3-204ENST00000357857 ARL2-SNX15V9GYD0 113 aa14.39□□□□□ -0.11
CLN3-204ENST00000357857 FAM74A7A6NL05 159 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 GGCTO75223 188 aaKnown RBP14.38□□□□□ -0.11
CLN3-204ENST00000357857 CRLF1O75462 422 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 GP9P14770 177 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 C10orf91Q5T1B1 145 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 OR4F5Q8NH21 305 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 UBE2E2Q96LR5 201 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 OR4F4Q96R69 305 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 TXNDC17Q9BRA2 123 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 TMEM14CQ9P0S9 112 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 NDUFA4O00483 81 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 NDUFS6O75380 124 aaKnown RBP14.38□□□□□ -0.11
CLN3-204ENST00000357857 ATP5G3P48201 142 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 CYB561D1Q8N8Q1 229 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 RNF24Q9Y225 148 aa14.38□□□□□ -0.11
CLN3-204ENST00000357857 TCF21O43680 179 aa14.37□□□□□ -0.11
CLN3-204ENST00000357857 LGALS1P09382 135 aaKnown RBP14.37□□□□□ -0.11
CLN3-204ENST00000357857 CEBPGP53567 150 aa14.37□□□□□ -0.11
CLN3-204ENST00000357857 BPIFA4PQ86YQ2 179 aa14.37□□□□□ -0.11
CLN3-204ENST00000357857 CARHSP1Q9Y2V2 147 aaKnown RBP14.37□□□□□ -0.11
CLN3-204ENST00000357857 NSD1Q96L73 2696 aaPredicted RBP14.37□□□□□ -0.11
CLN3-204ENST00000357857 CLPSL1A2RUU4 121 aa14.36□□□□□ -0.11
CLN3-204ENST00000357857 APOC3P02656 99 aa14.36□□□□□ -0.11
CLN3-204ENST00000357857 SOHLH1Q5JUK2 328 aa14.36□□□□□ -0.11
CLN3-204ENST00000357857 METTL26Q96S19 204 aa14.36□□□□□ -0.11
CLN3-204ENST00000357857 C20orf24Q9BUV8 137 aa14.36□□□□□ -0.11
CLN3-204ENST00000357857 FN1P02751 2386 aaKnown RBP14.36□□□□□ -0.11
CLN3-204ENST00000357857 A0A1W2PRE2 83 aa14.35□□□□□ -0.11
CLN3-204ENST00000357857 NDUFA7O95182 113 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms