RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 CXCL1P09341 107 aa17.52■□□□□ 0.39
PDLIM2-203ENST00000339162 BLCAPP62952 87 aa17.52■□□□□ 0.39
PDLIM2-203ENST00000339162 KRTAP1-3Q8IUG1 177 aa17.52■□□□□ 0.39
PDLIM2-203ENST00000339162 NECAP1Q8NC96 275 aa17.52■□□□□ 0.39
PDLIM2-203ENST00000339162 CHRDL1Q9BU40 450 aa17.52■□□□□ 0.39
PDLIM2-203ENST00000339162 PRRC2AP48634 2157 aaKnown RBP17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 TRAV30A0A087WSZ9 112 aa17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 TGIF2-C20orf24A0A0A6YYL0 155 aa17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 CLDN34H7C241 214 aa17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 GP9P14770 177 aa17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 RAB5AP20339 215 aa17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 USF2Q15853 346 aaPredicted RBP17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 DEFB112Q30KQ8 113 aa17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 Q6ZS46 218 aa17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 OCC1Q8TAD7 63 aa17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 CTSGP08311 255 aa17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 MEOX2P50222 304 aa17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 STXBP6Q8NFX7 210 aa17.51■□□□□ 0.39
PDLIM2-203ENST00000339162 NBEAP1P0C6P0 100 aa17.5■□□□□ 0.39
PDLIM2-203ENST00000339162 YPEL3P61236 119 aaPredicted RBP17.5■□□□□ 0.39
PDLIM2-203ENST00000339162 ZNF48Q96MX3 618 aaPredicted RBP17.5■□□□□ 0.39
PDLIM2-203ENST00000339162 CCDC168Q8NDH2 2452 aa17.5■□□□□ 0.39
PDLIM2-203ENST00000339162 IGHV3OR16-8A0A075B7F1 116 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 TRAV41A0A0B4J266 112 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 CXorf65A6NEN9 183 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 C1orf196B1AJZ1 125 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 HIST1H1BP16401 226 aaKnown RBP17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 GPR183P32249 361 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 ADMP35318 185 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 ZNF600Q6ZNG1 722 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 LINC00479Q96M42 142 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 TMEM242Q9NWH2 141 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 TRBV9A0A0B4J1U6 114 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 HELTA6NFD8 242 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 J3QLI3 93 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 ZNF329Q86UD4 541 aa17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 NOL4LQ96MY1 436 aaPredicted RBP17.49■□□□□ 0.39
PDLIM2-203ENST00000339162 WI2-2373I1.2A0A1W2PRP0 233 aa17.48■□□□□ 0.39
PDLIM2-203ENST00000339162 IGHV4-59P01825 116 aa17.48■□□□□ 0.39
PDLIM2-203ENST00000339162 FCGR2BP31994 310 aaPredicted RBP17.48■□□□□ 0.39
PDLIM2-203ENST00000339162 S100A12P80511 92 aa17.48■□□□□ 0.39
PDLIM2-203ENST00000339162 CLEC3BP05452 202 aa17.48■□□□□ 0.39
PDLIM2-203ENST00000339162 ZNF502Q8TBZ5 544 aa17.48■□□□□ 0.39
PDLIM2-203ENST00000339162 CTDSP1Q9GZU7 261 aa17.48■□□□□ 0.39
PDLIM2-203ENST00000339162 H7BYZ3 331 aa17.47■□□□□ 0.39
PDLIM2-203ENST00000339162 GNG5P63218 68 aa17.47■□□□□ 0.39
PDLIM2-203ENST00000339162 VN1R17PQ8TDU5 208 aa17.47■□□□□ 0.39
PDLIM2-203ENST00000339162 TMEM68Q96MH6 324 aa17.47■□□□□ 0.39
PDLIM2-203ENST00000339162 SHANK2-AS3Q9BTD1 123 aa17.47■□□□□ 0.39
PDLIM2-203ENST00000339162 MXRA5Q9NR99 2828 aa17.47■□□□□ 0.39
PDLIM2-203ENST00000339162 C5orf52A6NGY3 159 aa17.47■□□□□ 0.39
PDLIM2-203ENST00000339162 K7EN84 100 aa17.47■□□□□ 0.39
PDLIM2-203ENST00000339162 SNRPEP62304 92 aaKnown RBP17.47■□□□□ 0.39
PDLIM2-203ENST00000339162 CENPWQ5EE01 88 aa17.47■□□□□ 0.39
PDLIM2-203ENST00000339162 CLEC19AQ6UXS0 136 aa17.46■□□□□ 0.39
PDLIM2-203ENST00000339162 WFDC11Q8NEX6 87 aa17.46■□□□□ 0.39
PDLIM2-203ENST00000339162 CCDC140Q96MF4 163 aa17.46■□□□□ 0.39
PDLIM2-203ENST00000339162 PITPNC1Q9UKF7 332 aa17.46■□□□□ 0.39
PDLIM2-203ENST00000339162 ITPR3Q14573 2671 aa17.46■□□□□ 0.39
PDLIM2-203ENST00000339162 PGPA6NDG6 321 aa17.45■□□□□ 0.38
PDLIM2-203ENST00000339162 H3BRN7 92 aa17.45■□□□□ 0.38
PDLIM2-203ENST00000339162 C19orf54Q5BKX5 351 aa17.45■□□□□ 0.38
PDLIM2-203ENST00000339162 ZNF586Q9NXT0 402 aa17.45■□□□□ 0.38
PDLIM2-203ENST00000339162 RPH3ALQ9UNE2 315 aa17.45■□□□□ 0.38
PDLIM2-203ENST00000339162 RPS10P46783 165 aaKnown RBP17.45■□□□□ 0.38
PDLIM2-203ENST00000339162 GNG4P50150 75 aa17.45■□□□□ 0.38
PDLIM2-203ENST00000339162 MBD6Q96DN6 1003 aa17.45■□□□□ 0.38
PDLIM2-203ENST00000339162 TRAV34A0A0B4J273 112 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 UBE2CO00762 179 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 MYCNOSP40205 109 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 OR5I1Q13606 314 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 CIARTQ8N365 385 aaPredicted RBP17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 C17orf77Q96MU5 243 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 TXN2Q99757 166 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 GNB4Q9HAV0 340 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 GCN1Q92616 2671 aaKnown RBP17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 IGHG2P01859 326 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 GALR1P47211 349 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 KLK9Q2XQG4 91 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 SFRP2Q96HF1 295 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 SGK494Q96LW2 274 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 KLK9Q9UKQ9 250 aa17.44■□□□□ 0.38
PDLIM2-203ENST00000339162 TLN2Q9Y4G6 2542 aa17.43■□□□□ 0.38
PDLIM2-203ENST00000339162 C9JCJ5 164 aa17.43■□□□□ 0.38
PDLIM2-203ENST00000339162 SLC25A5P05141 298 aaKnown RBP17.43■□□□□ 0.38
PDLIM2-203ENST00000339162 PRB4P10163 310 aaPredicted RBP17.43■□□□□ 0.38
PDLIM2-203ENST00000339162 NHLRC2Q8NBF2 726 aa17.43■□□□□ 0.38
PDLIM2-203ENST00000339162 ANAPC16Q96DE5 110 aa17.43■□□□□ 0.38
PDLIM2-203ENST00000339162 ITPR2Q14571 2701 aa17.43■□□□□ 0.38
PDLIM2-203ENST00000339162 PEX7O00628 323 aa17.43■□□□□ 0.38
PDLIM2-203ENST00000339162 IGF1P05019 195 aa17.43■□□□□ 0.38
PDLIM2-203ENST00000339162 ZNF414Q96IQ9 312 aa17.43■□□□□ 0.38
PDLIM2-203ENST00000339162 Q9H3A6 140 aa17.43■□□□□ 0.38
PDLIM2-203ENST00000339162 M0QZK8 103 aa17.42■□□□□ 0.38
PDLIM2-203ENST00000339162 TRGV3P03979 118 aa17.42■□□□□ 0.38
PDLIM2-203ENST00000339162 S100A8P05109 93 aa17.42■□□□□ 0.38
PDLIM2-203ENST00000339162 S100A6P06703 90 aa17.42■□□□□ 0.38
PDLIM2-203ENST00000339162 PRSS57Q6UWY2 283 aa17.42■□□□□ 0.38
PDLIM2-203ENST00000339162 BPIFA4PQ86YQ2 179 aa17.42■□□□□ 0.38
PDLIM2-203ENST00000339162 TMEM14CQ9P0S9 112 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms