RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 TTC9CQ8N5M4 171 aa12.27□□□□□ -0.44
LSM6-201ENST00000296581 SEPSECSQ9HD40 501 aaKnown RBP12.27□□□□□ -0.44
LSM6-201ENST00000296581 TMEM242Q9NWH2 141 aa12.27□□□□□ -0.44
LSM6-201ENST00000296581 NAGKQ9UJ70 344 aa12.27□□□□□ -0.44
LSM6-201ENST00000296581 LOC102723971A0A1B0GUV8 181 aa12.27□□□□□ -0.45
LSM6-201ENST00000296581 I3L2K1 104 aa12.27□□□□□ -0.45
LSM6-201ENST00000296581 IGHV3-48P01763 117 aa12.27□□□□□ -0.45
LSM6-201ENST00000296581 ICAM4Q14773 271 aa12.27□□□□□ -0.45
LSM6-201ENST00000296581 GBGT1Q8N5D6 347 aa12.27□□□□□ -0.45
LSM6-201ENST00000296581 SRD5A3Q9H8P0 318 aa12.27□□□□□ -0.45
LSM6-201ENST00000296581 AURKAIP1Q9NWT8 199 aaPredicted RBP12.27□□□□□ -0.45
LSM6-201ENST00000296581 GNG13Q9P2W3 67 aa12.27□□□□□ -0.45
LSM6-201ENST00000296581 SOX21Q9Y651 276 aaPredicted RBP12.27□□□□□ -0.45
LSM6-201ENST00000296581 A0A1W2PPV4 95 aa12.26□□□□□ -0.45
LSM6-201ENST00000296581 TCRBV4S1A1TA0A5B7 111 aa12.26□□□□□ -0.45
LSM6-201ENST00000296581 HMGB3O15347 200 aaKnown RBP12.26□□□□□ -0.45
LSM6-201ENST00000296581 BCL2P10415 239 aa12.26□□□□□ -0.45
LSM6-201ENST00000296581 C5orf56Q8N8D9 126 aa12.26□□□□□ -0.45
LSM6-201ENST00000296581 HSPB9Q9BQS6 159 aa12.26□□□□□ -0.45
LSM6-201ENST00000296581 C20orf144Q9BQM9 153 aa12.26□□□□□ -0.45
LSM6-201ENST00000296581 MOB4Q9Y3A3 225 aa12.26□□□□□ -0.45
LSM6-201ENST00000296581 PRRC2AP48634 2157 aaKnown RBP12.25□□□□□ -0.45
LSM6-201ENST00000296581 ABCA1O95477 2261 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 CBY3A6NI87 242 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 HSPB1P04792 205 aaKnown RBP12.25□□□□□ -0.45
LSM6-201ENST00000296581 STAG3L2P0CL84 134 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 STAG3L3P0CL85 134 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 GATA2P23769 480 aaPredicted RBP12.25□□□□□ -0.45
LSM6-201ENST00000296581 RHOBP62745 196 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 TRGV9Q99603 122 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 ALKBH7Q9BT30 221 aaPredicted RBP12.25□□□□□ -0.45
LSM6-201ENST00000296581 IGLV11-55A0A075B6I3 123 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 ZFP92A6NM28 416 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 TMEM238C9JI98 176 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 K7EIM0 57 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 IFNA1P01562 189 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 SGMS2Q8NHU3 365 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 C19orf24Q9BVV8 132 aa12.25□□□□□ -0.45
LSM6-201ENST00000296581 FSHBP01225 129 aa12.24□□□□□ -0.45
LSM6-201ENST00000296581 TMEM241Q24JQ0 296 aa12.24□□□□□ -0.45
LSM6-201ENST00000296581 TMEM219Q86XT9 240 aa12.24□□□□□ -0.45
LSM6-201ENST00000296581 ORAOV1Q8WV07 137 aa12.24□□□□□ -0.45
LSM6-201ENST00000296581 FANCD2OSQ96PS1 177 aa12.24□□□□□ -0.45
LSM6-201ENST00000296581 RPH3ALQ9UNE2 315 aa12.24□□□□□ -0.45
LSM6-201ENST00000296581 IGHV3-21A0A0B4J1V1 117 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 PSMB11A5LHX3 300 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 A6NDX4 124 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 ZNF90Q03938 601 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 TNFRSF19Q9NS68 423 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 MAP1AP78559 2803 aaPredicted RBP12.23□□□□□ -0.45
LSM6-201ENST00000296581 H3BUX3 64 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 AMY1AP04745 511 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 OR5G3P0C626 314 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 PSMB3P49720 205 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 KLK9Q2XQG4 91 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 SPATA31B1PQ5VZV4 182 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 MANBALQ9NQG1 85 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 KLK9Q9UKQ9 250 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 FUT9Q9Y231 359 aa12.23□□□□□ -0.45
LSM6-201ENST00000296581 ZNF705FA8MVS1 300 aaPredicted RBP12.22□□□□□ -0.45
LSM6-201ENST00000296581 ATP6V0E1O15342 81 aa12.22□□□□□ -0.45
LSM6-201ENST00000296581 NDUFB8O95169 186 aa12.22□□□□□ -0.45
LSM6-201ENST00000296581 ZNF705DP0CH99 300 aaPredicted RBP12.22□□□□□ -0.45
LSM6-201ENST00000296581 ZNF705BP0CI00 300 aaPredicted RBP12.22□□□□□ -0.45
LSM6-201ENST00000296581 S100A7P31151 101 aa12.22□□□□□ -0.45
LSM6-201ENST00000296581 CXorf1O96002 111 aa12.22□□□□□ -0.45
LSM6-201ENST00000296581 FAM78BQ5VT40 261 aa12.22□□□□□ -0.45
LSM6-201ENST00000296581 FAM110DQ8TAY7 271 aaPredicted RBP12.22□□□□□ -0.45
LSM6-201ENST00000296581 GATAD1Q8WUU5 269 aa12.22□□□□□ -0.45
LSM6-201ENST00000296581 TMEM37Q8WXS4 190 aa12.22□□□□□ -0.45
LSM6-201ENST00000296581 NBPF19A0A087WUL8 3843 aa12.22□□□□□ -0.45
LSM6-201ENST00000296581 SVEP1Q4LDE5 3571 aa12.21□□□□□ -0.45
LSM6-201ENST00000296581 IGLC1P0CG04 106 aa12.21□□□□□ -0.45
LSM6-201ENST00000296581 ARL14EPLP0DKL9 152 aa12.21□□□□□ -0.45
LSM6-201ENST00000296581 PNRC1Q12796 327 aaPredicted RBP12.21□□□□□ -0.45
LSM6-201ENST00000296581 RNF2Q99496 336 aa12.21□□□□□ -0.45
LSM6-201ENST00000296581 SH2D7A6NKC9 451 aaPredicted RBP12.21□□□□□ -0.46
LSM6-201ENST00000296581 UBE2V1Q13404 147 aa12.21□□□□□ -0.46
LSM6-201ENST00000296581 MIR17HGQ75NE6 70 aa12.21□□□□□ -0.46
LSM6-201ENST00000296581 WFDC11Q8NEX6 87 aa12.21□□□□□ -0.46
LSM6-201ENST00000296581 OR5T1Q8NG75 326 aa12.21□□□□□ -0.46
LSM6-201ENST00000296581 MRPL32Q9BYC8 188 aaKnown RBP12.21□□□□□ -0.46
LSM6-201ENST00000296581 CSTL1Q9H114 145 aa12.21□□□□□ -0.46
LSM6-201ENST00000296581 CSPG4Q6UVK1 2322 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 CRIP2P52943 208 aaPredicted RBP12.2□□□□□ -0.46
LSM6-201ENST00000296581 UNQ5815/PRO19632Q6UWF5 114 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 C9orf139Q6ZV77 190 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 OR1L4Q8NGR5 311 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 ZNF48Q96MX3 618 aaPredicted RBP12.2□□□□□ -0.46
LSM6-201ENST00000296581 VPS25Q9BRG1 176 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 PYGO2Q9BRQ0 406 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 THYN1Q9P016 225 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 CREBBPQ92793 2442 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 LINC01548A6NM66 108 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 RANP62826 216 aaKnown RBP12.2□□□□□ -0.46
LSM6-201ENST00000296581 MEF2BQ02080 365 aaPredicted RBP12.2□□□□□ -0.46
LSM6-201ENST00000296581 LY6EQ16553 131 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 DEFB112Q30KQ8 113 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 C16orf82Q7Z2V1 217 aa12.2□□□□□ -0.46
LSM6-201ENST00000296581 BCL6BQ8N143 479 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms