RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 SRIP30626 198 aa14.53□□□□□ -0.08
SHKBP1-201ENST00000291842 Q0VG73 95 aa14.53□□□□□ -0.08
SHKBP1-201ENST00000291842 EXOC3-AS1Q8N2X6 119 aa14.53□□□□□ -0.08
SHKBP1-201ENST00000291842 NUP35Q8NFH5 326 aa14.53□□□□□ -0.08
SHKBP1-201ENST00000291842 RCHY1Q96PM5 261 aa14.53□□□□□ -0.08
SHKBP1-201ENST00000291842 ZNF331Q9NQX6 463 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-201ENST00000291842 ZNF586Q9NXT0 402 aa14.53□□□□□ -0.08
SHKBP1-201ENST00000291842 TRAV8-1A0A0A6YYK1 113 aa14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 A6NNC1 897 aa14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 ZNF705FA8MVS1 300 aaPredicted RBP14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 ZNF705DP0CH99 300 aaPredicted RBP14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 ZNF705BP0CI00 300 aaPredicted RBP14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 PAX2Q02962 417 aa14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 SLAQ13239 276 aa14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 FAM231DQ6ZW35 169 aa14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 REC114Q7Z4M0 266 aa14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 KIR3DL3Q8N743 410 aa14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 GRAMD2BQ96HH9 432 aa14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 ATG101Q9BSB4 218 aa14.52□□□□□ -0.08
SHKBP1-201ENST00000291842 PRTN3P24158 256 aa14.52□□□□□ -0.09
SHKBP1-201ENST00000291842 ZFP36P26651 326 aaKnown RBP14.52□□□□□ -0.09
SHKBP1-201ENST00000291842 CEACAM3P40198 252 aa14.52□□□□□ -0.09
SHKBP1-201ENST00000291842 USF2Q15853 346 aaPredicted RBP14.52□□□□□ -0.09
SHKBP1-201ENST00000291842 Q71RC1 249 aaPredicted RBP14.52□□□□□ -0.09
SHKBP1-201ENST00000291842 NEU4Q8WWR8 484 aaPredicted RBP14.52□□□□□ -0.09
SHKBP1-201ENST00000291842 TMEM68Q96MH6 324 aa14.52□□□□□ -0.09
SHKBP1-201ENST00000291842 GPR82Q96P67 336 aa14.52□□□□□ -0.09
SHKBP1-201ENST00000291842 RBM14Q96PK6 669 aaKnown RBP14.52□□□□□ -0.09
SHKBP1-201ENST00000291842 NCBP2LA6PVI3 153 aaKnown RBP14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 HIGD1CA8MV81 97 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 TCRAP04437 139 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 PAX1P15863 534 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 GDF5OSQ5U4N7 250 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 VMO1Q7Z5L0 202 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 C5orf17Q8NAS9 161 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 NEU1Q99519 415 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 POLR3KQ9Y2Y1 108 aaPredicted RBP14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 KLF12Q9Y4X4 402 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 ITPR1Q14643 2758 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 ODF3BA8MYP8 253 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 ZNF253O75346 499 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 HLA-DQA1P01909 254 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 APCSP02743 223 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 PAFAH1B2P68402 229 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 C17orf77Q96MU5 243 aa14.51□□□□□ -0.09
SHKBP1-201ENST00000291842 VWC2LB2RUY7 222 aa14.5□□□□□ -0.09
SHKBP1-201ENST00000291842 M0R1W7 72 aa14.5□□□□□ -0.09
SHKBP1-201ENST00000291842 ESDP10768 282 aa14.5□□□□□ -0.09
SHKBP1-201ENST00000291842 TCF24Q7RTU0 167 aa14.5□□□□□ -0.09
SHKBP1-201ENST00000291842 TBX15Q96SF7 602 aa14.5□□□□□ -0.09
SHKBP1-201ENST00000291842 SSBP4Q9BWG4 385 aaPredicted RBP14.5□□□□□ -0.09
SHKBP1-201ENST00000291842 HIST1H1EP10412 219 aaKnown RBP14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 CAMPP49913 170 aa14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 C5orf64Q2M2E5 130 aa14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 BCL6BQ8N143 479 aaPredicted RBP14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 ASCL2Q99929 193 aa14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 MRPL27Q9P0M9 148 aaKnown RBP14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 RNF114Q9Y508 228 aa14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 NDUFA3O95167 84 aa14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 GPR6P46095 362 aaPredicted RBP14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 TDRG1Q3Y452 100 aa14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 TOMM20LQ6UXN7 152 aa14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 NPBQ8NG41 125 aa14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 TSKUQ8WUA8 353 aa14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 NOL4LQ96MY1 436 aaPredicted RBP14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 MLST8Q9BVC4 326 aa14.49□□□□□ -0.09
SHKBP1-201ENST00000291842 BRS3P32247 399 aa14.48□□□□□ -0.09
SHKBP1-201ENST00000291842 NDPQ00604 133 aa14.48□□□□□ -0.09
SHKBP1-201ENST00000291842 TOMM40O96008 361 aa14.48□□□□□ -0.09
SHKBP1-201ENST00000291842 IL4P05112 153 aa14.48□□□□□ -0.09
SHKBP1-201ENST00000291842 PMCHP20382 165 aa14.48□□□□□ -0.09
SHKBP1-201ENST00000291842 COX19Q49B96 90 aa14.48□□□□□ -0.09
SHKBP1-201ENST00000291842 GOLT1AQ6ZVE7 132 aa14.48□□□□□ -0.09
SHKBP1-201ENST00000291842 FMC1Q96HJ9 113 aa14.48□□□□□ -0.09
SHKBP1-201ENST00000291842 UBTD1Q9HAC8 227 aa14.48□□□□□ -0.09
SHKBP1-201ENST00000291842 LTAP01374 205 aa14.47□□□□□ -0.09
SHKBP1-201ENST00000291842 IGHV3-23P01764 117 aa14.47□□□□□ -0.09
SHKBP1-201ENST00000291842 SIGLECL1Q8N7X8 197 aa14.47□□□□□ -0.09
SHKBP1-201ENST00000291842 SRSF8Q9BRL6 282 aaKnown RBP14.47□□□□□ -0.09
SHKBP1-201ENST00000291842 GPX1P07203 203 aa14.47□□□□□ -0.09
SHKBP1-201ENST00000291842 OR10J3Q5JRS4 329 aa14.47□□□□□ -0.09
SHKBP1-201ENST00000291842 CIARTQ8N365 385 aaPredicted RBP14.47□□□□□ -0.09
SHKBP1-201ENST00000291842 ZNF491Q8N8L2 437 aa14.47□□□□□ -0.09
SHKBP1-201ENST00000291842 VN1R17PQ8TDU5 208 aa14.47□□□□□ -0.09
SHKBP1-201ENST00000291842 A0A1W2PS18 150 aa14.46□□□□□ -0.09
SHKBP1-201ENST00000291842 AMTP48728 403 aa14.46□□□□□ -0.09
SHKBP1-201ENST00000291842 PRNTQ86SH4 94 aa14.46□□□□□ -0.09
SHKBP1-201ENST00000291842 DTX2Q86UW9 622 aa14.46□□□□□ -0.09
SHKBP1-201ENST00000291842 LURAP1LQ8IV03 231 aa14.46□□□□□ -0.09
SHKBP1-201ENST00000291842 OTORQ9NRC9 128 aa14.46□□□□□ -0.09
SHKBP1-201ENST00000291842 FBXL7Q9UJT9 491 aa14.46□□□□□ -0.09
SHKBP1-201ENST00000291842 TBL2Q9Y4P3 447 aaKnown RBP14.46□□□□□ -0.09
SHKBP1-201ENST00000291842 GNG7O60262 68 aa14.46□□□□□ -0.1
SHKBP1-201ENST00000291842 HOXB4P17483 251 aaPredicted RBP14.46□□□□□ -0.1
SHKBP1-201ENST00000291842 FCGR2BP31994 310 aaPredicted RBP14.46□□□□□ -0.1
SHKBP1-201ENST00000291842 FAM19A2Q8N3H0 131 aa14.46□□□□□ -0.1
SHKBP1-201ENST00000291842 RNF125Q96EQ8 232 aa14.46□□□□□ -0.1
SHKBP1-201ENST00000291842 FANCD2OSQ96PS1 177 aa14.46□□□□□ -0.1
SHKBP1-201ENST00000291842 RPP21Q9H633 154 aaKnown RBP14.46□□□□□ -0.1
SHKBP1-201ENST00000291842 P01737 135 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms