RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 A6NNC1 897 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 OR10W1Q8NGF6 305 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 CTSBP07858 339 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 DUTP33316 252 aaKnown RBP9.44□□□□□ -0.9
PTPN4-201ENST00000263708 MESP2Q0VG99 397 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 PPP1R3EQ9H7J1 279 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 PMS2P5A8MQ11 134 aa9.44□□□□□ -0.9
PTPN4-201ENST00000263708 COL11A2P13942 1736 aaPredicted RBP9.43□□□□□ -0.9
PTPN4-201ENST00000263708 RPL23P62829 140 aaKnown RBP9.43□□□□□ -0.9
PTPN4-201ENST00000263708 PMVKQ15126 192 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 MBNL3Q9NUK0 354 aaKnown RBP9.43□□□□□ -0.9
PTPN4-201ENST00000263708 PILRAQ9UKJ1 303 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 SRP19P09132 144 aaKnown RBP9.43□□□□□ -0.9
PTPN4-201ENST00000263708 FAM90A1Q86YD7 464 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 GTSF1LQ9H1H1 148 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 SOCS3O14543 225 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 CCL20P78556 96 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 PRDM6Q9NQX0 595 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 TMEM144Q7Z5S9 345 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 ATRXP46100 2492 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 BCL6BQ8N143 479 aaPredicted RBP9.43□□□□□ -0.9
PTPN4-201ENST00000263708 MPTX1A8MV57 137 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 J3QW42 95 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 C9orf106Q8NAJ2 232 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 COL5A3P25940 1745 aaPredicted RBP9.43□□□□□ -0.9
PTPN4-201ENST00000263708 VCYO14598 125 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 TBX6O95947 436 aaPredicted RBP9.43□□□□□ -0.9
PTPN4-201ENST00000263708 PFN2P35080 140 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 GNB1LQ9BYB4 327 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 IQCF6A8MYZ5 107 aa9.43□□□□□ -0.9
PTPN4-201ENST00000263708 MORN2Q502X0 79 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 BRD3OSQ6XYD6 125 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 C14orf178Q8N769 122 aaPredicted RBP9.42□□□□□ -0.9
PTPN4-201ENST00000263708 TRBV7-1A0A0A6YYK4 115 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 NHLRC3Q5JS37 347 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 SLC25A39Q9BZJ4 359 aaPredicted RBP9.42□□□□□ -0.9
PTPN4-201ENST00000263708 LY75O60449 1722 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 CSRP2Q16527 193 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 TAL2Q16559 108 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 MSRB2Q9Y3D2 182 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 C9JAW5 83 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 RNF166Q96A37 237 aaPredicted RBP9.42□□□□□ -0.9
PTPN4-201ENST00000263708 SBF1O95248 1867 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 WDR81Q562E7 1941 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 DKK4Q9UBT3 224 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 UCP1P25874 307 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 HAMPP81172 84 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 A0A1W2PRE2 83 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 CD5P06127 495 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 NDUFAF3Q9BU61 184 aa9.42□□□□□ -0.9
PTPN4-201ENST00000263708 EGR2P11161 476 aaPredicted RBP9.42□□□□□ -0.9
PTPN4-201ENST00000263708 A0A087WWC5 75 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 PRB2P02812 416 aaPredicted RBP9.41□□□□□ -0.9
PTPN4-201ENST00000263708 SELLP14151 372 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 TEX38Q6PEX7 206 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 EML6Q6ZMW3 1958 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 ACACAQ13085 2346 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 Q5BKY6 102 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 DEFB105AQ8NG35 78 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 SMPXQ9UHP9 88 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 MLNRO43193 412 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 SPINK8P0C7L1 97 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 C1orf53Q5VUE5 145 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 CACNA1EQ15878 2313 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 YPEL1O60688 119 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 UBE2BP63146 152 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 GUSBP1Q15486 140 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 YPEL2Q96QA6 119 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 NBASA2RRP1 2371 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 LRP5O75197 1615 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 TMEM14DPA8MWL7 114 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 A0A087X0K7 114 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 IGHV3-16A0A0C4DH30 117 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 FAM90A9PA6NNJ1 464 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 RSPO3Q9BXY4 272 aaPredicted RBP9.41□□□□□ -0.9
PTPN4-201ENST00000263708 LINC01549A6NIU2 74 aa9.41□□□□□ -0.9
PTPN4-201ENST00000263708 H3BUX3 64 aa9.4□□□□□ -0.9
PTPN4-201ENST00000263708 EFNB3Q15768 340 aa9.4□□□□□ -0.9
PTPN4-201ENST00000263708 TSKUQ8WUA8 353 aa9.4□□□□□ -0.9
PTPN4-201ENST00000263708 CHCHD2Q9Y6H1 151 aaPredicted RBP9.4□□□□□ -0.9
PTPN4-201ENST00000263708 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.4□□□□□ -0.9
PTPN4-201ENST00000263708 KLF5Q13887 457 aaPredicted RBP9.4□□□□□ -0.9
PTPN4-201ENST00000263708 Q71RC1 249 aaPredicted RBP9.4□□□□□ -0.9
PTPN4-201ENST00000263708 CD160O95971 181 aa9.4□□□□□ -0.9
PTPN4-201ENST00000263708 ZNF329Q86UD4 541 aa9.4□□□□□ -0.9
PTPN4-201ENST00000263708 ZNF525Q8N782 197 aa9.4□□□□□ -0.9
PTPN4-201ENST00000263708 LYZL1Q6UWQ5 148 aa9.4□□□□□ -0.9
PTPN4-201ENST00000263708 TMEM170AQ8WVE7 144 aa9.4□□□□□ -0.9
PTPN4-201ENST00000263708 GLI3P10071 1580 aa9.4□□□□□ -0.9
PTPN4-201ENST00000263708 DENND4AQ7Z401 1863 aa9.4□□□□□ -0.9
PTPN4-201ENST00000263708 Q8TAT8 98 aa9.4□□□□□ -0.9
PTPN4-201ENST00000263708 ZNF497Q6ZNH5 498 aa9.4□□□□□ -0.91
PTPN4-201ENST00000263708 IGHV2-26A0A0B4J1V2 119 aa9.4□□□□□ -0.91
PTPN4-201ENST00000263708 ERVH48-1M5A8F1 160 aa9.4□□□□□ -0.91
PTPN4-201ENST00000263708 FAM110DQ8TAY7 271 aaPredicted RBP9.4□□□□□ -0.91
PTPN4-201ENST00000263708 C1QTNF5Q9BXJ0 243 aa9.4□□□□□ -0.91
PTPN4-201ENST00000263708 SCRT2Q9NQ03 307 aa9.4□□□□□ -0.91
PTPN4-201ENST00000263708 ZNF319Q9P2F9 582 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 PQLC2LA1A4F0 135 aa9.39□□□□□ -0.91
PTPN4-201ENST00000263708 SH2D1AO60880 128 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms