RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 SUN5Q8TC36 379 aa17.72■□□□□ 0.43
SMARCB1-201ENST00000263121 SLC25A39Q9BZJ4 359 aaPredicted RBP17.72■□□□□ 0.43
SMARCB1-201ENST00000263121 SERTAD4Q9NUC0 356 aa17.72■□□□□ 0.43
SMARCB1-201ENST00000263121 SLC35B1P78383 322 aa17.71■□□□□ 0.43
SMARCB1-201ENST00000263121 SEC11CQ9BY50 192 aa17.71■□□□□ 0.43
SMARCB1-201ENST00000263121 TMEM167BQ9NRX6 74 aa17.71■□□□□ 0.43
SMARCB1-201ENST00000263121 PUS1Q9Y606 427 aaKnown RBP eCLIP17.71■□□□□ 0.43
SMARCB1-201ENST00000263121 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.71■□□□□ 0.42
SMARCB1-201ENST00000263121 F8W036 122 aa17.71■□□□□ 0.42
SMARCB1-201ENST00000263121 MEF2BQ02080 365 aaPredicted RBP17.71■□□□□ 0.42
SMARCB1-201ENST00000263121 CARHSP1Q9Y2V2 147 aaKnown RBP17.71■□□□□ 0.42
SMARCB1-201ENST00000263121 H3BRN7 92 aa17.7■□□□□ 0.42
SMARCB1-201ENST00000263121 RNASE1P07998 156 aaKnown RBP17.7■□□□□ 0.42
SMARCB1-201ENST00000263121 CD81P60033 236 aa17.7■□□□□ 0.42
SMARCB1-201ENST00000263121 ZNF343Q6P1L6 599 aa17.7■□□□□ 0.42
SMARCB1-201ENST00000263121 ZNF418Q8TF45 676 aaPredicted RBP17.7■□□□□ 0.42
SMARCB1-201ENST00000263121 SHANK2-AS3Q9BTD1 123 aa17.7■□□□□ 0.42
SMARCB1-201ENST00000263121 NDUFS6O75380 124 aaKnown RBP17.69■□□□□ 0.42
SMARCB1-201ENST00000263121 HILS1P60008 231 aa17.69■□□□□ 0.42
SMARCB1-201ENST00000263121 UBE2G2P60604 165 aa17.69■□□□□ 0.42
SMARCB1-201ENST00000263121 FOXE3Q13461 319 aa17.69■□□□□ 0.42
SMARCB1-201ENST00000263121 KIAA0141Q14154 515 aaPredicted RBP17.69■□□□□ 0.42
SMARCB1-201ENST00000263121 TEX38Q6PEX7 206 aa17.69■□□□□ 0.42
SMARCB1-201ENST00000263121 Q6ZSV7 163 aa17.69■□□□□ 0.42
SMARCB1-201ENST00000263121 STXBP6Q8NFX7 210 aa17.69■□□□□ 0.42
SMARCB1-201ENST00000263121 ZFAND3Q9H8U3 227 aa17.69■□□□□ 0.42
SMARCB1-201ENST00000263121 GNB4Q9HAV0 340 aa17.69■□□□□ 0.42
SMARCB1-201ENST00000263121 PPP5D1E7EU14 171 aa17.68■□□□□ 0.42
SMARCB1-201ENST00000263121 ELANEP08246 267 aa17.68■□□□□ 0.42
SMARCB1-201ENST00000263121 OR10J4P0C629 311 aa17.68■□□□□ 0.42
SMARCB1-201ENST00000263121 RPL15P61313 204 aaKnown RBP17.68■□□□□ 0.42
SMARCB1-201ENST00000263121 TOMM20LQ6UXN7 152 aa17.68■□□□□ 0.42
SMARCB1-201ENST00000263121 PAXXQ9BUH6 204 aa17.68■□□□□ 0.42
SMARCB1-201ENST00000263121 OR51M1Q9H341 326 aa17.68■□□□□ 0.42
SMARCB1-201ENST00000263121 ARL2-SNX15V9GYD0 113 aa17.68■□□□□ 0.42
SMARCB1-201ENST00000263121 IGHV3-11P01762 117 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 PYYP10082 97 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 UBE2L3P68036 154 aaKnown RBP17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 RELQ04864 619 aaPredicted RBP17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 RNF152Q8N8N0 203 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 CYB561D1Q8N8Q1 229 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 MYOZ3Q8TDC0 251 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 FXYD5Q96DB9 178 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 YTHDF2Q9Y5A9 579 aaKnown RBP17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 IGHV3-35A0A0C4DH35 117 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 FAM74A7A6NL05 159 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 TRBV12-3P01733 135 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 APOC3P02656 99 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 GP9P14770 177 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 ARL3P36405 182 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 LEMD1Q68G75 181 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 Q71RC1 249 aaPredicted RBP17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 OR4X2Q8NGF9 303 aa17.67■□□□□ 0.42
SMARCB1-201ENST00000263121 C11orf94C9JXX5 98 aa17.66■□□□□ 0.42
SMARCB1-201ENST00000263121 ATP5G3P48201 142 aa17.66■□□□□ 0.42
SMARCB1-201ENST00000263121 S100A7AQ86SG5 101 aa17.66■□□□□ 0.42
SMARCB1-201ENST00000263121 TXNDC17Q9BRA2 123 aa17.66■□□□□ 0.42
SMARCB1-201ENST00000263121 HIVEP2P31629 2446 aa17.65■□□□□ 0.42
SMARCB1-201ENST00000263121 INAFM1C9JVW0 142 aa17.65■□□□□ 0.42
SMARCB1-201ENST00000263121 BMPR1BO00238 502 aa17.65■□□□□ 0.42
SMARCB1-201ENST00000263121 CST9LP1Q5W188 147 aa17.65■□□□□ 0.42
SMARCB1-201ENST00000263121 OR4F5Q8NH21 305 aa17.65■□□□□ 0.42
SMARCB1-201ENST00000263121 OR4F4Q96R69 305 aa17.65■□□□□ 0.42
SMARCB1-201ENST00000263121 TMEM14CQ9P0S9 112 aa17.65■□□□□ 0.42
SMARCB1-201ENST00000263121 RPLP1P05386 114 aaKnown RBP17.64■□□□□ 0.42
SMARCB1-201ENST00000263121 SOHLH1Q5JUK2 328 aa17.64■□□□□ 0.42
SMARCB1-201ENST00000263121 RABAC1Q9UI14 185 aa17.64■□□□□ 0.42
SMARCB1-201ENST00000263121 ZNF98A6NK75 572 aa17.64■□□□□ 0.41
SMARCB1-201ENST00000263121 TMEM250H0YL14 139 aa17.64■□□□□ 0.41
SMARCB1-201ENST00000263121 FAM209BQ5JX69 171 aa17.64■□□□□ 0.41
SMARCB1-201ENST00000263121 FAM90A2PQ658T7 463 aa17.64■□□□□ 0.41
SMARCB1-201ENST00000263121 GUCA2BQ16661 112 aa17.63■□□□□ 0.41
SMARCB1-201ENST00000263121 A0A1W2PRE2 83 aa17.62■□□□□ 0.41
SMARCB1-201ENST00000263121 CLPSL1A2RUU4 121 aa17.62■□□□□ 0.41
SMARCB1-201ENST00000263121 PDE6DO43924 150 aa17.62■□□□□ 0.41
SMARCB1-201ENST00000263121 IGHV3OR16-8A0A075B7F1 116 aa17.61■□□□□ 0.41
SMARCB1-201ENST00000263121 CRYBA1P05813 215 aa17.61■□□□□ 0.41
SMARCB1-201ENST00000263121 CEBPGP53567 150 aa17.61■□□□□ 0.41
SMARCB1-201ENST00000263121 KLHDC1Q8N7A1 406 aa17.61■□□□□ 0.41
SMARCB1-201ENST00000263121 JMJD8Q96S16 334 aa17.61■□□□□ 0.41
SMARCB1-201ENST00000263121 PEF1Q9UBV8 284 aaKnown RBP17.61■□□□□ 0.41
SMARCB1-201ENST00000263121 NDUFA4O00483 81 aa17.61■□□□□ 0.41
SMARCB1-201ENST00000263121 MRPS12O15235 138 aaKnown RBP17.61■□□□□ 0.41
SMARCB1-201ENST00000263121 BPIFA4PQ86YQ2 179 aa17.61■□□□□ 0.41
SMARCB1-201ENST00000263121 CCDC28AQ8IWP9 274 aa17.61■□□□□ 0.41
SMARCB1-201ENST00000263121 SVBPQ8N300 66 aa17.61■□□□□ 0.41
SMARCB1-201ENST00000263121 F6UZH7 168 aa17.6■□□□□ 0.41
SMARCB1-201ENST00000263121 NBEAP1P0C6P0 100 aa17.6■□□□□ 0.41
SMARCB1-201ENST00000263121 S100A7P31151 101 aa17.6■□□□□ 0.41
SMARCB1-201ENST00000263121 UBE2E2Q96LR5 201 aa17.6■□□□□ 0.41
SMARCB1-201ENST00000263121 C16orf95Q9H693 158 aa17.6■□□□□ 0.41
SMARCB1-201ENST00000263121 RNF24Q9Y225 148 aa17.6■□□□□ 0.41
SMARCB1-201ENST00000263121 CUBNO60494 3623 aa17.6■□□□□ 0.41
SMARCB1-201ENST00000263121 GGTLC3B5MD39 225 aa17.59■□□□□ 0.41
SMARCB1-201ENST00000263121 GGCTO75223 188 aaKnown RBP17.59■□□□□ 0.41
SMARCB1-201ENST00000263121 HIST1H1EP10412 219 aaKnown RBP17.59■□□□□ 0.41
SMARCB1-201ENST00000263121 NPPCP23582 126 aa17.59■□□□□ 0.41
SMARCB1-201ENST00000263121 WIPF2Q8TF74 440 aaPredicted RBP17.59■□□□□ 0.41
SMARCB1-201ENST00000263121 OR5B12Q96R08 314 aa17.59■□□□□ 0.41
SMARCB1-201ENST00000263121 FLNBO75369 2602 aaKnown RBP17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms