RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TMEM155Q4W5P6 130 aa17.03■□□□□ 0.32
TRIM28-201ENST00000253024 FBLN7Q53RD9 439 aa17.03■□□□□ 0.32
TRIM28-201ENST00000253024 WDR73Q6P4I2 378 aa17.03■□□□□ 0.32
TRIM28-201ENST00000253024 MRPL32Q9BYC8 188 aaKnown RBP17.03■□□□□ 0.32
TRIM28-201ENST00000253024 NCOR1P1Q9H4R4 102 aa17.03■□□□□ 0.32
TRIM28-201ENST00000253024 PSG1P11464 419 aa17.02■□□□□ 0.32
TRIM28-201ENST00000253024 ERASQ7Z444 233 aa17.02■□□□□ 0.32
TRIM28-201ENST00000253024 NIT1Q86X76 327 aa17.02■□□□□ 0.32
TRIM28-201ENST00000253024 TXN2Q99757 166 aa17.02■□□□□ 0.32
TRIM28-201ENST00000253024 LY96Q9Y6Y9 160 aa17.02■□□□□ 0.32
TRIM28-201ENST00000253024 Q0VG73 95 aa17.02■□□□□ 0.31
TRIM28-201ENST00000253024 HES1Q14469 280 aa17.02■□□□□ 0.31
TRIM28-201ENST00000253024 TEX43Q6ZNM6 134 aa17.02■□□□□ 0.31
TRIM28-201ENST00000253024 GOLT1AQ6ZVE7 132 aa17.02■□□□□ 0.31
TRIM28-201ENST00000253024 RPEQ96AT9 228 aa17.02■□□□□ 0.31
TRIM28-201ENST00000253024 BORCS7Q96B45 105 aa17.02■□□□□ 0.31
TRIM28-201ENST00000253024 M0R2Z0 102 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 Q9H3A6 140 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 HYPMO75409 117 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 HLA-DQA1P01909 254 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 TCTAP57738 103 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 C21orf62-AS1Q17RA5 79 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 LDLRAD2Q5SZI1 272 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 Q8N976 141 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 PMCHL2Q9BQD1 86 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 CLEC7AQ9BXN2 247 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 FNDC10F2Z333 226 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 RAB4AP20338 218 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 LINC00173Q6ZV60 143 aa17.01■□□□□ 0.31
TRIM28-201ENST00000253024 TMSB15BA0A087X1C1 80 aa17■□□□□ 0.31
TRIM28-201ENST00000253024 FSTL3O95633 263 aa17■□□□□ 0.31
TRIM28-201ENST00000253024 CDSNQ15517 529 aa17■□□□□ 0.31
TRIM28-201ENST00000253024 MIEN1Q9BRT3 115 aa17■□□□□ 0.31
TRIM28-201ENST00000253024 SIGLEC9Q9Y336 463 aa17■□□□□ 0.31
TRIM28-201ENST00000253024 IGHV1-3A0A0C4DH29 117 aa17■□□□□ 0.31
TRIM28-201ENST00000253024 DLX6P56179 175 aa17■□□□□ 0.31
TRIM28-201ENST00000253024 Q6ZN92 141 aa17■□□□□ 0.31
TRIM28-201ENST00000253024 PERPQ96FX8 193 aa17■□□□□ 0.31
TRIM28-201ENST00000253024 PPP1R27Q86WC6 154 aa16.99■□□□□ 0.31
TRIM28-201ENST00000253024 PPIAL4CA0A0B4J2A2 164 aa16.99■□□□□ 0.31
TRIM28-201ENST00000253024 NPSP0C0P6 89 aa16.99■□□□□ 0.31
TRIM28-201ENST00000253024 PPIAL4GP0DN37 164 aa16.99■□□□□ 0.31
TRIM28-201ENST00000253024 GTSF1Q8WW33 167 aa16.98■□□□□ 0.31
TRIM28-201ENST00000253024 SRSF12Q8WXF0 261 aaKnown RBP16.98■□□□□ 0.31
TRIM28-201ENST00000253024 C22orf15Q8WYQ4 148 aa16.98■□□□□ 0.31
TRIM28-201ENST00000253024 C19orf24Q9BVV8 132 aa16.98■□□□□ 0.31
TRIM28-201ENST00000253024 MT-ND6P03923 174 aa16.98■□□□□ 0.31
TRIM28-201ENST00000253024 M0R3E3 92 aa16.98■□□□□ 0.31
TRIM28-201ENST00000253024 TRAV9-1A0A075B6T8 112 aa16.97■□□□□ 0.31
TRIM28-201ENST00000253024 VSTM5A8MXK1 200 aa16.97■□□□□ 0.31
TRIM28-201ENST00000253024 TIMM23O14925 209 aa16.97■□□□□ 0.31
TRIM28-201ENST00000253024 EBLN2Q6P2I7 272 aa16.97■□□□□ 0.31
TRIM28-201ENST00000253024 DAZAP1Q96EP5 407 aaKnown RBP16.97■□□□□ 0.31
TRIM28-201ENST00000253024 OR8B2Q96RD0 313 aa16.97■□□□□ 0.31
TRIM28-201ENST00000253024 P01737 135 aa16.97■□□□□ 0.31
TRIM28-201ENST00000253024 HINT1P49773 126 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-201ENST00000253024 IGFL4Q6B9Z1 124 aa16.97■□□□□ 0.31
TRIM28-201ENST00000253024 SPATA12Q7Z6I5 190 aa16.97■□□□□ 0.31
TRIM28-201ENST00000253024 MUC15Q8N387 334 aa16.97■□□□□ 0.31
TRIM28-201ENST00000253024 TRBV9A0A0B4J1U6 114 aa16.96■□□□□ 0.31
TRIM28-201ENST00000253024 C3orf36Q3SXR2 165 aa16.96■□□□□ 0.31
TRIM28-201ENST00000253024 GRAMD2BQ96HH9 432 aa16.96■□□□□ 0.31
TRIM28-201ENST00000253024 CD3EP07766 207 aa16.96■□□□□ 0.31
TRIM28-201ENST00000253024 MBD6Q96DN6 1003 aa16.96■□□□□ 0.31
TRIM28-201ENST00000253024 BUB1B-PAK6H3BSN5 160 aa16.95■□□□□ 0.3
TRIM28-201ENST00000253024 COL8A1P27658 744 aa16.95■□□□□ 0.3
TRIM28-201ENST00000253024 MC5RP33032 325 aa16.95■□□□□ 0.3
TRIM28-201ENST00000253024 HIST1H1EP10412 219 aaKnown RBP16.95■□□□□ 0.3
TRIM28-201ENST00000253024 SCNM1Q9BWG6 230 aa16.95■□□□□ 0.3
TRIM28-201ENST00000253024 RPLP1P05386 114 aaKnown RBP16.95■□□□□ 0.3
TRIM28-201ENST00000253024 SSX8Q7RTT4 187 aa16.95■□□□□ 0.3
TRIM28-201ENST00000253024 GPR82Q96P67 336 aa16.95■□□□□ 0.3
TRIM28-201ENST00000253024 RNF2Q99496 336 aa16.95■□□□□ 0.3
TRIM28-201ENST00000253024 RASL11BQ9BPW5 248 aa16.95■□□□□ 0.3
TRIM28-201ENST00000253024 CHODLQ9H9P2 273 aa16.95■□□□□ 0.3
TRIM28-201ENST00000253024 HIGD1AQ9Y241 93 aa16.95■□□□□ 0.3
TRIM28-201ENST00000253024 OR10J3Q5JRS4 329 aa16.94■□□□□ 0.3
TRIM28-201ENST00000253024 TNFRSF13BO14836 293 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-201ENST00000253024 SIAH2O43255 324 aa16.94■□□□□ 0.3
TRIM28-201ENST00000253024 TCRAP04437 139 aa16.94■□□□□ 0.3
TRIM28-201ENST00000253024 ESDP10768 282 aa16.94■□□□□ 0.3
TRIM28-201ENST00000253024 THAP8Q8NA92 274 aa16.94■□□□□ 0.3
TRIM28-201ENST00000253024 TMEM208Q9BTX3 173 aa16.94■□□□□ 0.3
TRIM28-201ENST00000253024 HIVEP3Q5T1R4 2406 aa16.93■□□□□ 0.3
TRIM28-201ENST00000253024 FXYD7P58549 80 aa16.93■□□□□ 0.3
TRIM28-201ENST00000253024 TEX22C9J3V5 150 aa16.93■□□□□ 0.3
TRIM28-201ENST00000253024 GP9P14770 177 aa16.93■□□□□ 0.3
TRIM28-201ENST00000253024 APOBEC3AP31941 199 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-201ENST00000253024 LGALS7P47929 136 aa16.93■□□□□ 0.3
TRIM28-201ENST00000253024 LBHQ53QV2 105 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-201ENST00000253024 ALKBH7Q9BT30 221 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-201ENST00000253024 SLC25A39Q9BZJ4 359 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-201ENST00000253024 FCGR2BP31994 310 aaPredicted RBP16.92■□□□□ 0.3
TRIM28-201ENST00000253024 C20orf144Q9BQM9 153 aa16.92■□□□□ 0.3
TRIM28-201ENST00000253024 LPAR2Q9HBW0 351 aa16.92■□□□□ 0.3
TRIM28-201ENST00000253024 ARL2-SNX15V9GYD0 113 aa16.92■□□□□ 0.3
TRIM28-201ENST00000253024 NCBP2LA6PVI3 153 aaKnown RBP16.92■□□□□ 0.3
TRIM28-201ENST00000253024 IL4P05112 153 aa16.92■□□□□ 0.3
TRIM28-201ENST00000253024 HNRNPA3P51991 378 aaKnown RBP16.92■□□□□ 0.3
TRIM28-201ENST00000253024 RPP21Q9H633 154 aaKnown RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms