RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ARAP1Q96P48 1450 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 BAZ1BQ9UIG0 1483 aaKnown RBP1.21□□□□□ -2.22
CD44-239ENST00000639002 TRGV10A0A0A0MS01 117 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 IGHV3-73A0A0B4J1V6 119 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 TRAV41A0A0B4J266 112 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 FAM92AA1XBS5 289 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 MEIS3P1A6NDR6 274 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 M0R2Z0 102 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 TP53I11O14683 189 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 OVOL1O14753 267 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 TAX1BP3O14907 124 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 LEPROTO15243 131 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 ZNF73O43830 326 aaPredicted RBP1.21□□□□□ -2.22
CD44-239ENST00000639002 CST7O76096 145 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 LY6HO94772 140 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 DPM2O94777 84 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 OR2H2O95918 312 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 IGHV3-53P01767 116 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 MSMBP08118 114 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 UCHL1P09936 223 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 UBBP0CG47 229 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 GPX2P18283 190 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 GZMHP20718 246 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 NFYAP23511 347 aaPredicted RBP1.21□□□□□ -2.22
CD44-239ENST00000639002 S100A11P31949 105 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 CA5AP35218 305 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 CCR2P41597 374 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 EIF2B2P49770 351 aaKnown RBP1.21□□□□□ -2.22
CD44-239ENST00000639002 UBE2BP63146 152 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 EIF3IQ13347 325 aaKnown RBP1.21□□□□□ -2.22
CD44-239ENST00000639002 NDUFA5Q16718 116 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 NOXRED1Q6NXP6 359 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 KTN1-AS1Q86SY8 53 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 TCTE3Q8IZS6 198 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 HIST3H2BBQ8N257 126 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 EXOC3-AS1Q8N2X6 119 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 RPRMLQ8N4K4 120 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 C12orf45Q8N5I9 185 aaPredicted RBP1.21□□□□□ -2.22
CD44-239ENST00000639002 PACRGLQ8N7B6 248 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 CNEP1R1Q8N9A8 125 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 TMEM229BQ8NBD8 167 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 TSTD1Q8NFU3 115 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 OR8J3Q8NGG0 315 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 OR51T1Q8NGJ9 327 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 OR8D4Q8NGM9 314 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 SCGB3A1Q96QR1 104 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 SLC25A21Q9BQT8 299 aaPredicted RBP1.21□□□□□ -2.22
CD44-239ENST00000639002 DERL1Q9BUN8 251 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 HIGD2AQ9BW72 106 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 ZNF471Q9BX82 626 aaPredicted RBP1.21□□□□□ -2.22
CD44-239ENST00000639002 OR2H1Q9GZK4 316 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 YIPF3Q9GZM5 350 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 SMDT1Q9H4I9 107 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 OSTCQ9NRP0 149 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 OR5V1Q9UGF6 321 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 MED31Q9Y3C7 131 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 LINC00588Q9Y4M8 146 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 U3KQK5 164 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 BCL9O00512 1426 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 TECPR2O15040 1411 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 ZDBF2Q9HCK1 2354 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 MYH11P35749 1972 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 SMARCA2P51531 1590 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 MED23Q9ULK4 1368 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 NEBP20929 6669 aa1.21□□□□□ -2.22
CD44-239ENST00000639002 DSCAML1Q8TD84 2053 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 ANKRD31Q8N7Z5 1873 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 FBN2P35556 2912 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 CCDC171Q6TFL3 1326 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 RIMS1Q86UR5 1692 aaKnown RBP1.2□□□□□ -2.22
CD44-239ENST00000639002 A0A0J9YW62 118 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 LOC102725191A0A1B0GVB3 256 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 TRDV1A0A1B0GX56 115 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 TMEM235A6NFC5 223 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 MIF4GDA9UHW6 222 aaKnown RBP1.2□□□□□ -2.22
CD44-239ENST00000639002 C19orf84I3L1E1 186 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 LECT2O14960 151 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 SLC22A1O15245 554 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 NDUFA2O43678 99 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 LYZL6O75951 148 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 TCL1BO95988 128 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 IGKV1-5P01602 117 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 TRGC2P03986 189 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 IFNA4P05014 189 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 MPC1LP0DKB6 136 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 RPL7P18124 248 aaKnown RBP1.2□□□□□ -2.22
CD44-239ENST00000639002 EVI2AP22794 236 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 CRYBB3P26998 211 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 PSMB8P28062 276 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 HLA-DMBP28068 263 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 SDC2P34741 201 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 RBM11P57052 281 aaKnown RBP1.2□□□□□ -2.22
CD44-239ENST00000639002 LSM3P62310 102 aaKnown RBP1.2□□□□□ -2.22
CD44-239ENST00000639002 PSG9Q00887 426 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 MSMO1Q15800 293 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 MIAQ16674 131 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 LGALS9BQ3B8N2 356 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 C1orf140Q5VVS0 124 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 LGALS9CQ6DKI2 356 aa1.2□□□□□ -2.22
CD44-239ENST00000639002 C4orf22Q6V702 233 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms