RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 C12orf77C9JDV5 145 aa4.63□□□□□ -1.67
SCN1A-209ENST00000635750 HLA-DQB1P01920 261 aa4.63□□□□□ -1.67
SCN1A-209ENST00000635750 FAM90A2PQ658T7 463 aa4.63□□□□□ -1.67
SCN1A-209ENST00000635750 PSG8Q9UQ74 426 aa4.63□□□□□ -1.67
SCN1A-209ENST00000635750 PTPRDP23468 1912 aa4.63□□□□□ -1.67
SCN1A-209ENST00000635750 C1orf159Q96HA4 380 aa4.63□□□□□ -1.67
SCN1A-209ENST00000635750 MIXL1Q9H2W2 232 aa4.63□□□□□ -1.67
SCN1A-209ENST00000635750 PLAC1Q9HBJ0 212 aa4.63□□□□□ -1.67
SCN1A-209ENST00000635750 MBNL3Q9NUK0 354 aaKnown RBP4.63□□□□□ -1.67
SCN1A-209ENST00000635750 TFF3Q07654 80 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 DMRTA1Q5VZB9 504 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 CHCHD1Q96BP2 118 aaKnown RBP4.62□□□□□ -1.67
SCN1A-209ENST00000635750 OOSP1A8MZH6 123 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 GNLYP22749 145 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 PSG7Q13046 419 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 MIR17HGQ75NE6 70 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 C9orf106Q8NAJ2 232 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 APCDD1LQ8NCL9 501 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 DSCR8Q96T75 97 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 DOCK4Q8N1I0 1966 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 LTBP4Q8N2S1 1624 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 GLI3P10071 1580 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 A0A0G2JK05 382 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 SRRM4A7MD48 611 aaKnown RBP4.62□□□□□ -1.67
SCN1A-209ENST00000635750 IL18BPO95998 194 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 ZNF708P17019 499 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 C17orf98A8MV24 154 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 H3BUX3 64 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 TAL2Q16559 108 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 TMEM256Q8N2U0 113 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 C1QTNF5Q9BXJ0 243 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 ADAMTS7Q9UKP4 1686 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 TRBV25-1A0A075B6N4 114 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 CRLF1O75462 422 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 CCL3L1P16619 93 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 UBE2BP63146 152 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 CD300EQ496F6 205 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-209ENST00000635750 C2orf82Q6UX34 121 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 ST6GALNAC6Q969X2 333 aa4.62□□□□□ -1.67
SCN1A-209ENST00000635750 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.62□□□□□ -1.678e-7■■■■□ 21.2
SCN1A-209ENST00000635750 M0R1W7 72 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 FCN3O75636 299 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 PPIFP30405 207 aaKnown RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 LIMS1P48059 325 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 GAGE13Q4V321 117 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 MORN2Q502X0 79 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 C1QL2Q7Z5L3 287 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 FAM110DQ8TAY7 271 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 SIGMAR1Q99720 223 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 SMIM2Q9BVW6 85 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 FNDC4Q9H6D8 234 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 IGHG3P01860 377 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 RFPL3SP0C7P2 107 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 PRB3Q04118 309 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 GAGE2BQ13066 116 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 ZNF625Q96I27 306 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 NPIPB5A8MRT5 1133 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 H3BUT2 72 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 CXCL2P19875 107 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 GNG5P63218 68 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 ZNF672Q499Z4 452 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 PRIMA1Q86XR5 153 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 RCC1LQ96I51 464 aaKnown RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 PRDM6Q9NQX0 595 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 LSM4Q9Y4Z0 139 aaKnown RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 TRAV25A0A0B4J276 109 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 hADV29S1A0JD25 119 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 NDUFS8O00217 210 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 TCRAP04437 139 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 GATA2P23769 480 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 ZNF138P52744 262 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 SSBP2P81877 361 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 IRF3Q14653 427 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 FAM19A2Q8N3H0 131 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 CHCHD2Q9Y6H1 151 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 EML6Q6ZMW3 1958 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 ADAMTSL1Q8N6G6 1762 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 TRAV13-1A0A0B4J241 112 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 FAM90A9PA6NNJ1 464 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 CHKB-CPT1BH3BT56 60 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 SUPT4H1P63272 117 aaKnown RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 TCTEX1D4Q5JR98 221 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 ZNF474Q6S9Z5 364 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 TM2D1Q9BX74 207 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 IGHV2-26A0A0B4J1V2 119 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 CENPVL1A0A0U1RR11 272 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 CELA3AP09093 270 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 LHX2P50458 406 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 VWC2Q2TAL6 325 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 TRBV5-7A0A0A0MS05 114 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 Q5PR19 223 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 ZNF660Q6AZW8 331 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-209ENST00000635750 IFI27L1Q96BM0 104 aa4.61□□□□□ -1.67
SCN1A-209ENST00000635750 IGKV1-8A0A0C4DH67 115 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 CELA3BP08861 270 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 CCL20P78556 96 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 KLF5Q13887 457 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-209ENST00000635750 SP5Q6BEB4 398 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-209ENST00000635750 RNASE7Q9H1E1 156 aaKnown RBP4.6□□□□□ -1.67
SCN1A-209ENST00000635750 LINC00527Q9UJ94 153 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms