RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 USF2Q15853 346 aaPredicted RBP13.94□□□□□ -0.18
CCDC28A-203ENST00000617445 ZNF79Q15937 498 aa13.94□□□□□ -0.18
CCDC28A-203ENST00000617445 SPANXN2Q5MJ10 180 aa13.94□□□□□ -0.18
CCDC28A-203ENST00000617445 TRPT1Q86TN4 253 aaKnown RBP13.94□□□□□ -0.18
CCDC28A-203ENST00000617445 OR51G1Q8NGK1 321 aa13.94□□□□□ -0.18
CCDC28A-203ENST00000617445 C11orf45Q8TAV5 145 aa13.94□□□□□ -0.18
CCDC28A-203ENST00000617445 PSG1P11464 419 aa13.93□□□□□ -0.18
CCDC28A-203ENST00000617445 SNRPD3P62318 126 aaKnown RBP13.93□□□□□ -0.18
CCDC28A-203ENST00000617445 RAB11AP62491 216 aa13.93□□□□□ -0.18
CCDC28A-203ENST00000617445 PHLDA1Q8WV24 401 aaPredicted RBP13.93□□□□□ -0.18
CCDC28A-203ENST00000617445 SLC35E1Q96K37 410 aa13.93□□□□□ -0.18
CCDC28A-203ENST00000617445 TMED3Q9Y3Q3 217 aa13.93□□□□□ -0.18
CCDC28A-203ENST00000617445 LY6G6CO95867 125 aa13.92□□□□□ -0.18
CCDC28A-203ENST00000617445 VAMP1P23763 118 aa13.92□□□□□ -0.18
CCDC28A-203ENST00000617445 GAMTQ14353 236 aa13.92□□□□□ -0.18
CCDC28A-203ENST00000617445 OR8G2PQ6IF36 304 aa13.92□□□□□ -0.18
CCDC28A-203ENST00000617445 CIB3Q96Q77 187 aaPredicted RBP13.92□□□□□ -0.18
CCDC28A-203ENST00000617445 NRN1Q9NPD7 142 aa13.92□□□□□ -0.18
CCDC28A-203ENST00000617445 ZFP92A6NM28 416 aa13.91□□□□□ -0.18
CCDC28A-203ENST00000617445 UBE2MP61081 183 aaKnown RBP13.91□□□□□ -0.18
CCDC28A-203ENST00000617445 RPP30P78346 268 aaKnown RBP13.91□□□□□ -0.18
CCDC28A-203ENST00000617445 ACTL10Q5JWF8 245 aa13.91□□□□□ -0.18
CCDC28A-203ENST00000617445 SIGLEC15Q6ZMC9 328 aa13.91□□□□□ -0.18
CCDC28A-203ENST00000617445 RNF125Q96EQ8 232 aa13.91□□□□□ -0.18
CCDC28A-203ENST00000617445 RAB40CQ96S21 281 aa13.91□□□□□ -0.18
CCDC28A-203ENST00000617445 ALMS1Q8TCU4 4167 aa13.9□□□□□ -0.18
CCDC28A-203ENST00000617445 SFT2D2O95562 160 aa13.9□□□□□ -0.18
CCDC28A-203ENST00000617445 GIG44P09565 113 aaPredicted RBP13.9□□□□□ -0.18
CCDC28A-203ENST00000617445 NUTF2P61970 127 aaKnown RBP13.9□□□□□ -0.18
CCDC28A-203ENST00000617445 PSMG4Q5JS54 123 aa13.9□□□□□ -0.18
CCDC28A-203ENST00000617445 CENPSQ8N2Z9 138 aa13.9□□□□□ -0.18
CCDC28A-203ENST00000617445 KNCNA6PVL3 124 aa13.89□□□□□ -0.19
CCDC28A-203ENST00000617445 SNRPGP15A8MWD9 76 aa13.89□□□□□ -0.19
CCDC28A-203ENST00000617445 MIFP14174 115 aa13.89□□□□□ -0.19
CCDC28A-203ENST00000617445 C1orf194Q5T5A4 169 aa13.89□□□□□ -0.19
CCDC28A-203ENST00000617445 TRGV9Q99603 122 aa13.89□□□□□ -0.19
CCDC28A-203ENST00000617445 SRRQ9GZT4 340 aa13.89□□□□□ -0.19
CCDC28A-203ENST00000617445 HRH4Q9H3N8 390 aa13.89□□□□□ -0.19
CCDC28A-203ENST00000617445 FBXL17Q9UF56 701 aa13.89□□□□□ -0.19
CCDC28A-203ENST00000617445 PLECQ15149 4684 aaKnown RBP13.89□□□□□ -0.19
CCDC28A-203ENST00000617445 NAP1L6A6NFF2 107 aa13.88□□□□□ -0.19
CCDC28A-203ENST00000617445 ZNF705EA8MWA4 302 aaPredicted RBP13.88□□□□□ -0.19
CCDC28A-203ENST00000617445 CFDP00746 253 aaPredicted RBP13.88□□□□□ -0.19
CCDC28A-203ENST00000617445 TCTAP57738 103 aa13.88□□□□□ -0.19
CCDC28A-203ENST00000617445 NANOS2P60321 138 aaKnown RBP13.88□□□□□ -0.19
CCDC28A-203ENST00000617445 PPP1R1AQ13522 171 aa13.88□□□□□ -0.19
CCDC28A-203ENST00000617445 PBDC1Q9BVG4 233 aa13.88□□□□□ -0.19
CCDC28A-203ENST00000617445 C1QTNF4Q9BXJ3 329 aa13.88□□□□□ -0.19
CCDC28A-203ENST00000617445 IGKV1D-37A0A075B6S9 117 aa13.87□□□□□ -0.19
CCDC28A-203ENST00000617445 SYNGR2O43760 224 aa13.87□□□□□ -0.19
CCDC28A-203ENST00000617445 NKX2-1P43699 371 aaPredicted RBP13.87□□□□□ -0.19
CCDC28A-203ENST00000617445 INPP1P49441 399 aa13.87□□□□□ -0.19
CCDC28A-203ENST00000617445 Q8NAQ8 132 aa13.87□□□□□ -0.19
CCDC28A-203ENST00000617445 C11orf94C9JXX5 98 aa13.86□□□□□ -0.19
CCDC28A-203ENST00000617445 IAPPP10997 89 aa13.86□□□□□ -0.19
CCDC28A-203ENST00000617445 ID1P41134 155 aa13.86□□□□□ -0.19
CCDC28A-203ENST00000617445 ZNF90Q03938 601 aa13.86□□□□□ -0.19
CCDC28A-203ENST00000617445 GGNBP1Q5YKI7 109 aa13.86□□□□□ -0.19
CCDC28A-203ENST00000617445 THAP8Q8NA92 274 aa13.86□□□□□ -0.19
CCDC28A-203ENST00000617445 HOXB5P09067 269 aa13.85□□□□□ -0.19
CCDC28A-203ENST00000617445 C4BPBP20851 252 aa13.85□□□□□ -0.19
CCDC28A-203ENST00000617445 SAMD13Q5VXD3 122 aa13.85□□□□□ -0.19
CCDC28A-203ENST00000617445 TRIQKQ629K1 86 aa13.85□□□□□ -0.19
CCDC28A-203ENST00000617445 LGALS9CQ6DKI2 356 aa13.85□□□□□ -0.19
CCDC28A-203ENST00000617445 CSNK1G2-AS1Q8NCQ2 148 aa13.85□□□□□ -0.19
CCDC28A-203ENST00000617445 C2CD4CQ8TF44 421 aa13.85□□□□□ -0.19
CCDC28A-203ENST00000617445 TBC1D24Q9ULP9 559 aa13.85□□□□□ -0.19
CCDC28A-203ENST00000617445 PAIP2BQ9ULR5 123 aaKnown RBP13.85□□□□□ -0.19
CCDC28A-203ENST00000617445 H3BMM0 161 aa13.84□□□□□ -0.19
CCDC28A-203ENST00000617445 DEFB4AO15263 64 aa13.84□□□□□ -0.19
CCDC28A-203ENST00000617445 NDUFB6O95139 128 aa13.84□□□□□ -0.19
CCDC28A-203ENST00000617445 S100A7P31151 101 aa13.84□□□□□ -0.19
CCDC28A-203ENST00000617445 LYZP61626 148 aa13.84□□□□□ -0.19
CCDC28A-203ENST00000617445 SLC45A2Q9UMX9 530 aa13.84□□□□□ -0.19
CCDC28A-203ENST00000617445 IGHV4-28A0A0C4DH34 117 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 C9orf170A2RU37 121 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 CENPXA8MT69 81 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 WRBO00258 174 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 RBMY1A1P0DJD3 496 aaKnown RBP13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 RBMY1CP0DJD4 496 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 HLA-DRB4P13762 266 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 RBMY1FQ15415 496 aaKnown RBP13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 BAK1Q16611 211 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 SPATA31B1PQ5VZV4 182 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 PPP1R14BQ96C90 147 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 MAGT1Q9H0U3 335 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 STRAPQ9Y3F4 350 aaKnown RBP13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 HLA-DRB4X5D2U9 266 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 X6R8D5 127 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 HYDINQ4G0P3 5121 aa13.83□□□□□ -0.2
CCDC28A-203ENST00000617445 PSMB3P49720 205 aa13.82□□□□□ -0.2
CCDC28A-203ENST00000617445 ID3Q02535 119 aa13.82□□□□□ -0.2
CCDC28A-203ENST00000617445 CNPY1Q3B7I2 92 aa13.82□□□□□ -0.2
CCDC28A-203ENST00000617445 OR8I2Q8N0Y5 310 aa13.82□□□□□ -0.2
CCDC28A-203ENST00000617445 COQ8AQ8NI60 647 aa13.82□□□□□ -0.2
CCDC28A-203ENST00000617445 CLUHP3Q96NS8 147 aa13.82□□□□□ -0.2
CCDC28A-203ENST00000617445 SDHCQ99643 169 aaPredicted RBP13.82□□□□□ -0.2
CCDC28A-203ENST00000617445 C7orf50Q9BRJ6 194 aaKnown RBP13.82□□□□□ -0.2
CCDC28A-203ENST00000617445 IGKV1OR2-108A0A075B7D4 117 aa13.81□□□□□ -0.2
CCDC28A-203ENST00000617445 PRSS46E5RG02 174 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms