RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 H2BFSP57053 126 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 DLK1P80370 383 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 OXA1LQ15070 435 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 LAMTOR1Q6IAA8 161 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 STX12Q86Y82 276 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 TMEM231Q9H6L2 316 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 ZFAND3Q9H8U3 227 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 SMPXQ9UHP9 88 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 SORL1Q92673 2214 aa13.01□□□□□ -0.33
CLN3-217ENST00000565354 PMS2P5A8MQ11 134 aa13.01□□□□□ -0.33
CLN3-217ENST00000565354 DEDDO75618 318 aa13.01□□□□□ -0.33
CLN3-217ENST00000565354 IL4P05112 153 aa13.01□□□□□ -0.33
CLN3-217ENST00000565354 TRGV9Q99603 122 aa13.01□□□□□ -0.33
CLN3-217ENST00000565354 RHPN1-AS1Q9BWJ2 59 aa13.01□□□□□ -0.33
CLN3-217ENST00000565354 LYRM2Q9NU23 88 aaPredicted RBP13.01□□□□□ -0.33
CLN3-217ENST00000565354 IGHV3OR16-13A0A075B7E8 117 aa13□□□□□ -0.33
CLN3-217ENST00000565354 IGHV3-74A0A0B4J1X5 117 aa13□□□□□ -0.33
CLN3-217ENST00000565354 LCE6AA0A183 80 aa13□□□□□ -0.33
CLN3-217ENST00000565354 A0A1W2PS18 150 aa13□□□□□ -0.33
CLN3-217ENST00000565354 IZUMO1RA6ND01 250 aa13□□□□□ -0.33
CLN3-217ENST00000565354 E5RGE8 158 aa13□□□□□ -0.33
CLN3-217ENST00000565354 PSG1P11464 419 aa13□□□□□ -0.33
CLN3-217ENST00000565354 SLC38A11Q08AI6 406 aa13□□□□□ -0.33
CLN3-217ENST00000565354 GTSCR1Q86UQ5 136 aa13□□□□□ -0.33
CLN3-217ENST00000565354 LILRB2Q8N423 598 aa13□□□□□ -0.33
CLN3-217ENST00000565354 THAP8Q8NA92 274 aa13□□□□□ -0.33
CLN3-217ENST00000565354 OR51G1Q8NGK1 321 aa13□□□□□ -0.33
CLN3-217ENST00000565354 PPP1R1CQ8WVI7 109 aa13□□□□□ -0.33
CLN3-217ENST00000565354 ZNF414Q96IQ9 312 aa13□□□□□ -0.33
CLN3-217ENST00000565354 PBDC1Q9BVG4 233 aa13□□□□□ -0.33
CLN3-217ENST00000565354 CHEK1O14757 476 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 CST7O76096 145 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 HNRNPCP07910 306 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLN3-217ENST00000565354 SULT1A1P50225 295 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 HBG1P69891 147 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 HBG2P69892 147 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 ZNF90Q03938 601 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 OR2F1Q13607 317 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 FCN2Q15485 313 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 TMEM144Q7Z5S9 345 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 TMEM61Q8N0U2 210 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 TMEM217Q8N7C4 229 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 WDR89Q96FK6 387 aaPredicted RBP12.99□□□□□ -0.33
CLN3-217ENST00000565354 GRAMD2BQ96HH9 432 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 GGACTQ9BVM4 153 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 SLC25A31Q9H0C2 315 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 C11orf1Q9H5F2 150 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 NPVFQ9HCQ7 196 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 RABAC1Q9UI14 185 aa12.99□□□□□ -0.33
CLN3-217ENST00000565354 IGKV1D-37A0A075B6S9 117 aa12.98□□□□□ -0.33
CLN3-217ENST00000565354 TRAV25A0A0B4J276 109 aa12.98□□□□□ -0.33
CLN3-217ENST00000565354 IGHV3-66A0A0C4DH42 116 aa12.98□□□□□ -0.33
CLN3-217ENST00000565354 FNDC10F2Z333 226 aa12.98□□□□□ -0.33
CLN3-217ENST00000565354 LYL1P12980 280 aa12.98□□□□□ -0.33
CLN3-217ENST00000565354 LYZP61626 148 aa12.98□□□□□ -0.33
CLN3-217ENST00000565354 TMEM252Q8N6L7 170 aa12.98□□□□□ -0.33
CLN3-217ENST00000565354 RNF125Q96EQ8 232 aa12.98□□□□□ -0.33
CLN3-217ENST00000565354 OR5AC2Q9NZP5 309 aa12.98□□□□□ -0.33
CLN3-217ENST00000565354 PFDN2Q9UHV9 154 aa12.98□□□□□ -0.33
CLN3-217ENST00000565354 IGSF23A1L1A6 192 aa12.97□□□□□ -0.33
CLN3-217ENST00000565354 MPC2O95563 127 aa12.97□□□□□ -0.33
CLN3-217ENST00000565354 CFDP00746 253 aaPredicted RBP12.97□□□□□ -0.33
CLN3-217ENST00000565354 CXCL3P19876 107 aa12.97□□□□□ -0.33
CLN3-217ENST00000565354 S100A11P31949 105 aa12.97□□□□□ -0.33
CLN3-217ENST00000565354 P2RY1P47900 373 aa12.97□□□□□ -0.33
CLN3-217ENST00000565354 RPL11P62913 178 aaKnown RBP12.97□□□□□ -0.33
CLN3-217ENST00000565354 ARL16Q0P5N6 197 aa12.97□□□□□ -0.33
CLN3-217ENST00000565354 TEPPQ6URK8 271 aa12.97□□□□□ -0.33
CLN3-217ENST00000565354 BPIFCQ8NFQ6 507 aa12.97□□□□□ -0.33
CLN3-217ENST00000565354 ST8SIA2Q92186 375 aa12.97□□□□□ -0.33
CLN3-217ENST00000565354 RCHY1Q96PM5 261 aa12.97□□□□□ -0.33
CLN3-217ENST00000565354 RNF2Q99496 336 aa12.97□□□□□ -0.33
CLN3-217ENST00000565354 IGKV3-7A0A075B6H7 116 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 IGKV1OR2-108A0A075B7D4 117 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 ZNF785A8K8V0 405 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 APOHP02749 345 aaPredicted RBP12.96□□□□□ -0.33
CLN3-217ENST00000565354 CD5P06127 495 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 CRYBB3P26998 211 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 CD81P60033 236 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 USF2Q15853 346 aaPredicted RBP12.96□□□□□ -0.33
CLN3-217ENST00000565354 CYP2G1PQ6ZSU1 146 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 TCF24Q7RTU0 167 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 OR11H7Q8NGC8 314 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 THAP6Q8TBB0 222 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 PPP1R14BQ96C90 147 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 UQCC1Q9NVA1 299 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 SMAD5-AS1Q9Y6J3 95 aa12.96□□□□□ -0.33
CLN3-217ENST00000565354 H0YIZ8 118 aa12.95□□□□□ -0.34
CLN3-217ENST00000565354 NUP62P37198 522 aaPredicted RBP12.95□□□□□ -0.34
CLN3-217ENST00000565354 EIF2B2P49770 351 aaKnown RBP12.95□□□□□ -0.34
CLN3-217ENST00000565354 PAFAH1B2P68402 229 aa12.95□□□□□ -0.34
CLN3-217ENST00000565354 SPAG8Q99932 426 aaPredicted RBP12.95□□□□□ -0.34
CLN3-217ENST00000565354 TMEM147Q9BVK8 224 aa12.95□□□□□ -0.34
CLN3-217ENST00000565354 VSIRQ9H7M9 311 aa12.95□□□□□ -0.34
CLN3-217ENST00000565354 MBD2Q9UBB5 411 aa12.95□□□□□ -0.34
CLN3-217ENST00000565354 STARD9Q9P2P6 4700 aa12.94□□□□□ -0.34
CLN3-217ENST00000565354 OR4C46A6NHA9 309 aa12.94□□□□□ -0.34
CLN3-217ENST00000565354 TSPAN4O14817 238 aa12.94□□□□□ -0.34
CLN3-217ENST00000565354 S100A7P31151 101 aa12.94□□□□□ -0.34
CLN3-217ENST00000565354 EWSR1Q01844 656 aaKnown RBP eCLIP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms